PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00042828-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family HSF
Protein Properties Length: 619aa    MW: 69537.7 Da    PI: 4.9773
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00042828-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind100.31.8e-314145072103
                       HHHHHHHHHCTGGGTTTSEES.SSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXX CS
      HSF_DNA-bind   2 Flkklyeiledeelkelisws.engnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkel 93 
                       Fl k+y++++d+++++++sw  + gnsfvv++++ef+ +vLp yF h +f+SFvRQLn+YgF+k+ + +           F+++ Fkkg+k+l
  PSME_00042828-RA 414 FLVKTYRLVDDPSTDHIVSWAdHAGNSFVVWHPKEFSASVLPLYFNHARFSSFVRQLNTYGFRKIVRGR---------CVFANELFKKGQKHL 497
                       9********************8889****************************************9999.........56************* PP

                       XXXXXXXXXX CS
      HSF_DNA-bind  94 lekikrkkse 103
                       l++i+r+ks+
  PSME_00042828-RA 498 LSRIQRRKSS 507
                       *******986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004151.4E-46410504IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467858.03E-29412504IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.105.0E-33412504IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000567.7E-16414437IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004474.7E-27414504IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000567.7E-16453465IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000567.7E-16466478IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 619 aa     Download sequence    Send to blast
MSGKWFKMFM YTRNVGEHVD IIVDGGAITA LVQHIQAPTV GEGEGLIACE HEVEKDVAFA  60
LGLLAVKITI GFFELQTSEE TMDGVHRIIL PSLCFIGGIF SSNRDELSPL KEGLRKVKFF  120
IEYVAVVRSK KASEEEDGSD EKLSPVSEKS EFFESDDSTS TDECEEHGSD YRIFSEFKKS  180
LSYGPLAATN LVVEGVLHLD SIENVVGKFW VNICPMSVIP RKYFVGFFHP EGLGDSCEFL  240
QGVKSFDSIW KEITNGSVNG TNNYEPKIYT VSWNDHFFLL NIEKESYYVI NTVEEREFEG  300
CNHAYILKFY KDIEMYHLPP GEKKPEEEKN NTNLVSIAVD NVENVSEQQG ENASFQLKDT  360
KTLEDQGHKE MEKKLIYQEA ANAGRIFAAM EAADGGRGSG GHVRDARRVV ASPFLVKTYR  420
LVDDPSTDHI VSWADHAGNS FVVWHPKEFS ASVLPLYFNH ARFSSFVRQL NTYGFRKIVR  480
GRCVFANELF KKGQKHLLSR IQRRKSSTMQ ALQMVECDQS STLMANSSST VQEDSPVPAA  540
APSLSEESEI LRRNIPLLLS EIARLQNICA EISCCLFATK PGILVERSKM DDLNRSSTMT  600
DVAEEINMNP PELFGVPLY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A2e-1841450820124Heat shock factor protein 1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G46264.11e-41heat shock transcription factor B4