PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00042737-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family ARR-B
Protein Properties Length: 445aa    MW: 48955.2 Da    PI: 5.1006
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00042737-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like88.56.1e-28244297155
           G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                       kpr++W+ eLH++Fv+a++ L G++kA+Pk+ilelm+v+gLt+e+v+SHLQkYRl
  PSME_00042737-RA 244 KPRVVWSMELHQQFVNAINTL-GIDKAIPKRILELMNVQGLTREKVASHLQKYRL 297
                       79*******************.********************************8 PP
2Response_reg746e-25571651109
                       EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHH CS
      Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealk 91 
                       vl+vdD+p+ + ll+++l + +y +v+++ ++  al ll+e++  +Dl++ D+ mp+mdG++ll++   e  +lp+i+++++ge + + + + 
  PSME_00042737-RA  57 VLVVDDDPICLLLLENLLHHCHY-NVTSCGQAITALSLLRENRdkFDLVISDVYMPDMDGFKLLEHVGLEL-DLPVIMMSSNGETSVVMKGIT 147
                       89*********************.***************999889**********************5543.7******************** PP

                       TTESEEEESS--HHHHHH CS
      Response_reg  92 aGakdflsKpfdpeelvk 109
                        Ga ++l Kp+ +eel +
  PSME_00042737-RA 148 HGACEYLLKPIRIEELKN 165
                       ***************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF521727.68E-3554179IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23004.1E-4154178No hitNo description
SMARTSM004481.8E-3055167IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011040.41356171IPR001789Signal transduction response regulator, receiver domain
PfamPF000721.3E-2257165IPR001789Signal transduction response regulator, receiver domain
CDDcd001565.93E-2158170No hitNo description
SuperFamilySSF466891.36E-18241301IPR009057Homeodomain-like
PROSITE profilePS512949.99241300IPR017930Myb domain
Gene3DG3DSA:1.10.10.606.1E-29241302IPR009057Homeodomain-like
TIGRFAMsTIGR015571.7E-24244297IPR006447Myb domain, plants
PfamPF002491.4E-5246296IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009873Biological Processethylene-activated signaling pathway
GO:0010082Biological Processregulation of root meristem growth
GO:0010119Biological Processregulation of stomatal movement
GO:0010150Biological Processleaf senescence
GO:0071368Biological Processcellular response to cytokinin stimulus
GO:0080113Biological Processregulation of seed growth
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 445 aa     Download sequence    Send to blast
MGRSEGGLAV VIMQQSPHTN TSVVPGNLNM KDLKSNDRVK VMNDEEANDD FPIGMRVLVV  60
DDDPICLLLL ENLLHHCHYN VTSCGQAITA LSLLRENRDK FDLVISDVYM PDMDGFKLLE  120
HVGLELDLPV IMMSSNGETS VVMKGITHGA CEYLLKPIRI EELKNIWQHV VRKKRTESKD  180
HENLDHGDGN DKFNHGAEDG ENGSSANDGT DHSWKMNRKR KEQNDDEDDD EDEHDIEDPS  240
TSKKPRVVWS MELHQQFVNA INTLGIDKAI PKRILELMNV QGLTREKVAS HLQKYRLYLK  300
RLSGVASQQG SMGNAFGGGR ESSFGSLCQV DGIGDLQFLA QSGHLSAHAL ESLQAGVLGR  360
LNGSVGLGLP GLNSSGMLQF ASLPGLGYNN IIGREQGIAP VNNPMNAFPY ISTGLELDQL  420
QQKQQIARLG DIGAPVDDPA GFRTM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5lxu_A5e-21244300157Transcription factor LUX
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. Could directly activate some type-A response regulators in response to cytokinins. Involved in the expression of nuclear genes for components of mitochondrial complex I. Promotes cytokinin-mediated leaf longevity. Involved in the ethylene signaling pathway in an ETR1-dependent manner and in the cytokinin signaling pathway. {ECO:0000269|PubMed:11370868, ECO:0000269|PubMed:11574878, ECO:0000269|PubMed:15282545, ECO:0000269|PubMed:16407152}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00054PBMTransfer from AT4G16110Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020575988.11e-139two-component response regulator ORR23
RefseqXP_020575989.11e-139two-component response regulator ORR23
SwissprotQ9ZWJ91e-119ARR2_ARATH; Two-component response regulator ARR2
TrEMBLA0A0C9RI590.0A0A0C9RI59_9SPER; TSA: Wollemia nobilis Ref_Wollemi_Transcript_18815_3529 transcribed RNA sequence
STRINGXP_008794326.11e-137(Phoenix dactylifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16110.11e-112response regulator 2
Publications ? help Back to Top
  1. Takahashi N, et al.
    Cytokinins control endocycle onset by promoting the expression of an APC/C activator in Arabidopsis roots.
    Curr. Biol., 2013. 23(18): p. 1812-7
    [PMID:24035544]
  2. Ge XM, et al.
    Heterotrimeric G protein mediates ethylene-induced stomatal closure via hydrogen peroxide synthesis in Arabidopsis.
    Plant J., 2015. 82(1): p. 138-50
    [PMID:25704455]
  3. Takahashi N,Umeda M
    Cytokinins promote onset of endoreplication by controlling cell cycle machinery.
    Plant Signal Behav, 2014. 9(8): p. e29396
    [PMID:25763620]
  4. Kobayashi K, et al.
    Shoot Removal Induces Chloroplast Development in Roots via Cytokinin Signaling.
    Plant Physiol., 2017. 173(4): p. 2340-2355
    [PMID:28193764]
  5. Arnaud D, et al.
    Cytokinin-Mediated Regulation of Reactive Oxygen Species Homeostasis Modulates Stomatal Immunity in Arabidopsis.
    Plant Cell, 2017. 29(3): p. 543-559
    [PMID:28254779]
  6. Zhang TQ, et al.
    A Two-Step Model for de Novo Activation of WUSCHEL during Plant Shoot Regeneration.
    Plant Cell, 2017. 29(5): p. 1073-1087
    [PMID:28389585]
  7. Meng WJ, et al.
    Type-B ARABIDOPSIS RESPONSE REGULATORs Specify the Shoot Stem Cell Niche by Dual Regulation of WUSCHEL.
    Plant Cell, 2017. 29(6): p. 1357-1372
    [PMID:28576846]
  8. Zhang F,May A,Irish VF
    Type-B ARABIDOPSIS RESPONSE REGULATORs Directly Activate WUSCHEL.
    Trends Plant Sci., 2017. 22(10): p. 815-817
    [PMID:28886911]
  9. Takatsuka H,Higaki T,Umeda M
    Actin Reorganization Triggers Rapid Cell Elongation in Roots.
    Plant Physiol., 2018. 178(3): p. 1130-1141
    [PMID:30185441]