PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PSME_00042612-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
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Family | HB-other | ||||||||
Protein Properties | Length: 182aa MW: 20981.6 Da PI: 10.7003 | ||||||||
Description | HB-other family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 16.9 | 1.1e-05 | 63 | 106 | 9 | 52 |
HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHH CS Homeobox 9 keqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrR 52 ++ +e+ ++F +n ps + L+k+l+L+ + V +W +N R PSME_00042612-RA 63 ANAVERFRQVFFENELPSMPYKLVLSKQLDLPYQHVHMWLKNAR 106 5678889999********************************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 4.0E-8 | 44 | 106 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 10.349 | 52 | 112 | IPR001356 | Homeobox domain |
SMART | SM00389 | 0.0034 | 54 | 116 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 2.78E-7 | 54 | 115 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 182 aa Download sequence Send to blast |
MPRNEKSNET NIMGKGVVGP KKKIPKEKEV ESASLTSVVR VENKSRNTKR KNESRRTLSR 60 LPANAVERFR QVFFENELPS MPYKLVLSKQ LDLPYQHVHM WLKNARHMSL KKKKLNCLKE 120 SVAPVIFANT IRLKVEIYPK EGVDFSNDKN PEGISNLLSE ELLMYVPVVE LRKKTLQVAP 180 VK |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G29940.1 | 4e-14 | pathogenesis related homeodomain protein A |