PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PSME_00042468-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
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Family | B3 | ||||||||
Protein Properties | Length: 74aa MW: 8562.78 Da PI: 5.4781 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 32.3 | 1.7e-10 | 4 | 72 | 11 | 80 |
HHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE...EEETTEEEE-TTHHHHHHHHT--TT-EE CS B3 11 lksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkl.iyrkksgryvltkGWkeFvkangLkegDfv 80 l+++ l++ f++++ +g++ t+ed +g sW+++ y ++++r+v+t+GW eF+ +++ k+gD++ PSME_00042468-RA 4 LTLHPLSFHVVFMTKYlSGSQ---GIATFEDCDGISWRIEWyAYLQSGRRIVFTTGWYEFAFDHNAKDGDIL 72 566667777788989964442...269*************9456999999********************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50863 | 9.46 | 1 | 74 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 3.28E-9 | 3 | 72 | No hit | No description |
Pfam | PF02362 | 7.5E-9 | 5 | 72 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 1.2E-9 | 9 | 73 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 2.16E-10 | 11 | 73 | IPR015300 | DNA-binding pseudobarrel domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 74 aa Download sequence Send to blast |
MPVLTLHPLS FHVVFMTKYL SGSQGIATFE DCDGISWRIE WYAYLQSGRR IVFTTGWYEF 60 AFDHNAKDGD ILLV |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A176VD87 | 4e-17 | A0A176VD87_MARPO; Uncharacterized protein | ||||
TrEMBL | A0A2R6WGI7 | 4e-17 | A0A2R6WGI7_MARPO; Uncharacterized protein |