PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00042385-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family NAC
Protein Properties Length: 443aa    MW: 49652.2 Da    PI: 6.5876
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00042385-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM105.56.9e-33582011128
               NAM   1 lppGfrFhPtdeelvveyLkkkvegkk......leleev.ikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknra........ 77 
                       lp G++F+Ptd+el+ e+L+ k++ ++      ++++   i+   +i++++P++Lp  ++ +    +fF++ +k+y+tg+rk+r+        
  PSME_00042385-RA  58 LPSGVKFDPTDQELI-EHLQGKISCDNsaphplIDEFIPtIEGGdGICYTHPEKLP-GISRDGLVRHFFHRPSKAYTTGTRKRRKiqtacdes 148
                       699************.99****999887886543333333555545**********.565666688******************856666665 PP

               NAM  78 .tksgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128
                          + +W++tgk+++vl+ +g  +g+kk+Lv+y   g+++k+ekt+Wvmh+y+l
  PSME_00042385-RA 149 sEGETRWHKTGKTRPVLV-NGMPKGCKKILVLYtnFGKHRKPEKTNWVMHQYHL 201
                       444778************.999***********5547999999*********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019415.36E-3847220IPR003441NAC domain
PROSITE profilePS5100532.43458220IPR003441NAC domain
PfamPF023653.8E-1559201IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 443 aa     Download sequence    Send to blast
MILNSVQQNG LLMAGKYRNA TSSSQLIDAK LEEYRIKKCP SCGHQIERKE ALQDWPGLPS  60
GVKFDPTDQE LIEHLQGKIS CDNSAPHPLI DEFIPTIEGG DGICYTHPEK LPGISRDGLV  120
RHFFHRPSKA YTTGTRKRRK IQTACDESSE GETRWHKTGK TRPVLVNGMP KGCKKILVLY  180
TNFGKHRKPE KTNWVMHQYH LGTQEEEKEG ELVVSKVFYQ TQPRQCNWEK ATDAGDACKA  240
SITEATQVSE RCAAGETVSS TDRHIYSSYN PLEQQAKVTH SSHNLSVAQS RSESSDQGTD  300
SKSPESTHGT PSFGDGISDF HLNKDTHNQL VKPCNHCNNV IIRDDQRAGG SQEEPSRDQL  360
PSLHESQFTN LLFCHETLQA GALNYNAKFQ RYGSLDLDEL AAELGLPLHD NTNTEILDMA  420
SVTKEVQEAL SNSQEADWLK YFR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A1e-125820115140Stress-induced transcription factor NAC1
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00460DAPTransfer from AT4G29230Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1037250.0BT103725.1 Picea glauca clone GQ02801_D11 mRNA sequence.
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29230.11e-122NAC domain containing protein 75