PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PSME_00042313-RA

Organism

Pseudotsuga menziesii

Taxonomic ID

3357

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga

Family

NAC

Protein Properties

Length: 333aa MW: 37608.9 Da PI: 7.1693

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PSME_00042313-RA	genome	PRS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	167.4	4.9e-52	16	145	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 lppGfrFhPtdeelv +yLkkk ++++l++ ++i+e+d+yk++Pw+Lp k++ +e+ewyfFs+rd ky++g r+nra++sgyWkatg+dk++l PSME_00042313-RA 16 LPPGFRFHPTDEELVIHYLKKKESSTPLPV-TIIAEIDLYKFDPWELPGKATFGEQEWYFFSPRDMKYPNGARPNRAATSGYWKATGTDKPIL 107 79**************************.89***********8888999*********************************9 PP NAM 94 sk...kgelvglkktLvfykgrapkgektdWvmheyrl 128 + ++++vg+kk Lvfy gr pkg kt+W+mhey+l PSME_00042313-RA 108 IStsgGTQKVGVKKALVFYGGRPPKGIKTNWIMHEYHL 145 998888899**************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	2.62E-63	10	176	IPR003441	NAC domain
PROSITE profile	PS51005	60.359	16	175	IPR003441	NAC domain
Pfam	PF02365	2.2E-27	17	145	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 333 aa Download sequence Send to blast
MESPASFSGS HQQPQLPPGF RFHPTDEELV IHYLKKKESS TPLPVTIIAE IDLYKFDPWE 60 LPGKATFGEQ EWYFFSPRDM KYPNGARPNR AATSGYWKAT GTDKPILIST SGGTQKVGVK 120 KALVFYGGRP PKGIKTNWIM HEYHLADSGA RPCSFPNKKG SLRLDDWVLC RIYKKNGHSQ 180 RVQGAERDES LSTDDPFIEG LLNDEAMDGN GNISRLPHQV HSSDLSHNNF SNSNDNNSDF 240 QFEVVPKQEA LAVDNGNKFN SLKRTLSLAA FGDEEIHSAK RFNDIYNVNN NVSALLNSMQ 300 PNQNFQQQNF LSALTDSQQN FRLPYIHNMH WSS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3swm_A	1e-73	13	181	17	174	NAC domain-containing protein 19
3swm_B	1e-73	13	181	17	174	NAC domain-containing protein 19
3swm_C	1e-73	13	181	17	174	NAC domain-containing protein 19
3swm_D	1e-73	13	181	17	174	NAC domain-containing protein 19
3swp_A	1e-73	13	181	17	174	NAC domain-containing protein 19
3swp_B	1e-73	13	181	17	174	NAC domain-containing protein 19
3swp_C	1e-73	13	181	17	174	NAC domain-containing protein 19
3swp_D	1e-73	13	181	17	174	NAC domain-containing protein 19
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor of the NAC family associated with the grain protein content (GPC). Accelerates senescence and increases nutrient remobilization from leaves to developing grains. Sequences of 11 European varieties of H.vulgare tested belongs to the same haplotype while the sequence found in H.spontaneum, an ancestor of the cultivated H.vulgare which has a higher GPC, belongs to an other haplotype. {ECO:0000269\|PubMed:17124321}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027930033.1	1e-108	NAC transcription factor 56-like
Swissprot	A0SPJ9	2e-92	NAM2_HORVV; NAC transcription factor NAM-2
TrEMBL	A0A2G5CE11	1e-108	A0A2G5CE11_AQUCA; Uncharacterized protein
STRING	Aquca_059_00027.1	1e-109	(Aquilegia coerulea)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G61110.1	9e-92	NAC domain containing protein 25

Publications ? help Back to Top
Uauy C,Distelfeld A,Fahima T,Blechl A,Dubcovsky J A NAC Gene regulating senescence improves grain protein, zinc, and iron content in wheat. Science, 2006. 314(5803): p. 1298-301 [PMID:17124321]