PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00041974-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family MYB
Protein Properties Length: 864aa    MW: 97070.1 Da    PI: 9.6567
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00041974-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding39.31.6e-12410457148
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                       rg+WT  Ed +l +++k +G   W + +++ g+ R++k+c++rw++yl
  PSME_00041974-RA 410 RGPWTRHEDVRLTNYIKAHGEAGWVALPAKAGLLRCGKSCRLRWLNYL 457
                       89******************************99************97 PP
2Myb_DNA-binding38.82.1e-12468507647
                       HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
   Myb_DNA-binding   6 teEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                       ++E+ l+++++++lG++ W++Ia +++  Rt++++k++w++ 
  PSME_00041974-RA 468 PDEEYLIIRLHRLLGNR-WALIAGRIP-SRTDNEIKNYWNTN 507
                       79***************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.48E-23408504IPR009057Homeodomain-like
PROSITE profilePS500909.64408457IPR017877Myb-like domain
SMARTSM007175.2E-9409459IPR001005SANT/Myb domain
PfamPF002496.9E-10410457IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.9E-17411464IPR009057Homeodomain-like
CDDcd001675.24E-6412457No hitNo description
PROSITE profilePS5129421.957458512IPR017930Myb domain
SMARTSM007171.4E-12462510IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.9E-21465513IPR009057Homeodomain-like
PfamPF002491.5E-11468507IPR001005SANT/Myb domain
CDDcd001671.35E-9468508No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 864 aa     Download sequence    Send to blast
MNPSLTPPTS HVTIFPKLYP PQQHQNGETT TRPMQLDLSM DPIPGCQGQQ ESCRKARRLR  60
FPRAAGCYNT LHRPLRKLRR RGIYRRPWQP VRCYHEEEER LPYKICNQTK FTASRKFSEN  120
PRDRLVFSQQ NQHHEIQHVP SSTPNDCISP PLAHIPLKMG STYQSNNNRS SCASCGGPDS  180
QLQDTTGVTS CFIKVIPVSS PPHSSPLNIL SQQAKTHDQP ETDVMTPADK LQNPNNNSVK  240
MVTACSANVC PRSCLRKSLD SSKKKKQISF QIPDIDCSTH PGRFPQELHH GVCNKKAKMD  300
EPELKPKKCR PLSERLWKLE LPLQMKPDAA YIPIAGDIAD DSVWLNVSRN RRRRPPEVQL  360
DVQAIKKIKK ELRKPKQKQI HDPVQKEPWP RGVCTASSES MGRTPLALNR GPWTRHEDVR  420
LTNYIKAHGE AGWVALPAKA GLLRCGKSCR LRWLNYLRPD VKRGHILPDE EYLIIRLHRL  480
LGNRWALIAG RIPSRTDNEI KNYWNTNLSK KLISQGINPR THKHFSEPQD KGSNPGEREA  540
SQKSQWKNNR TIPARSIAES RADHLQAMPS KGGGAIAGHD NQDDRASTAW PPLNKQFPQA  600
SLAYNPTPRA SLAIHFLSRY SVIYSMTNAF QQYTNYLLCF PGILSHSTNT NNIGSKQSYF  660
DSLTPCKAFR SSARDGVGRY DLDQNLLKNP VTSSNDMIAS TVRLSSGLIT APFATQFKSS  720
HAFLSGNALL NGKHAGMSSL QSLQDFETNP HSSFIVNPYE EADSHQLSHT SCVASEQNAA  780
ACSCHYPIIP TVMGAALGDF NSDIFPSLLK SFGNEELMQL EEGYSADTSI AQNVQACLLN  840
EDKAENLTRY DLLAKLCPWS QYQP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A6e-244085125108B-MYB
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13540.13e-55myb domain protein 5