PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00041883-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family MYB
Protein Properties Length: 389aa    MW: 43431.4 Da    PI: 6.89
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00041883-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding50.35.5e-161461148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                      +g+WT eEd++lv+++++ G g+W++ ++  g+ R++k+c++rw +yl
  PSME_00041883-RA 14 KGPWTCEEDQILVNYIQKNGHGSWRALPKLAGLLRCGKSCRLRWTNYL 61
                      79******************************99************97 PP
2Myb_DNA-binding49.31.2e-1567112148
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                       rg +T+eE+  ++++++ lG++ W+ Ia+ ++ gRt++++k++w+++l
  PSME_00041883-RA  67 RGLFTKEEERTILQLHAILGNR-WSGIASQLP-GRTDNEIKNFWNTHL 112
                       788*******************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.605.7E-22564IPR009057Homeodomain-like
PROSITE profilePS5129414.88961IPR017930Myb domain
SuperFamilySSF466891.88E-2911108IPR009057Homeodomain-like
SMARTSM007171.3E-111363IPR001005SANT/Myb domain
PfamPF002491.8E-141461IPR001005SANT/Myb domain
CDDcd001677.44E-91661No hitNo description
PROSITE profilePS5129425.89562116IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.7E-2565116IPR009057Homeodomain-like
SMARTSM007177.2E-1666114IPR001005SANT/Myb domain
PfamPF002491.7E-1467112IPR001005SANT/Myb domain
CDDcd001679.11E-1270112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 389 aa     Download sequence    Send to blast
MGRVPCSEKT GLKKGPWTCE EDQILVNYIQ KNGHGSWRAL PKLAGLLRCG KSCRLRWTNY  60
LRPDIRRGLF TKEEERTILQ LHAILGNRWS GIASQLPGRT DNEIKNFWNT HLKKRLLKMG  120
LDPSTHAPHA EANPTAPDRS EALALTRHKA QWENARLDAE ARLSRESLSY FTAGYNNINN  180
TVEMITTTGN NTPTDYFLKI WHSDAGQTFR KESSSIRIIN NTCNNSQHVF DQNYPGGGLG  240
DVHVLSSGIS KSPSTSGSVS SLSCASTQLS WDQSLNPNDK DKVNDSQQCN SASAEITGDC  300
NILKTLVMLS SSADMTMGQT EHRASEYSSR SKELGLAHVS EELLLDFPYS DTNNNNGIGC  360
MITELSTSFQ QQQSAWLWPE LQLEDDKDY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A7e-28121165108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that may play a role in flower development by repressing ANT (PubMed:19232308). Regulates the transition of meristem identity from vegetative growth to flowering. Acts downstream of LFY and upstream of AP1. Directly activates AP1 to promote floral fate. Together with LFY and AP1 may constitute a regulatory network that contributes to an abrupt and robust meristem identity transition (PubMed:21750030). {ECO:0000269|PubMed:19232308, ECO:0000269|PubMed:21750030}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021904296.13e-95transcription factor MYB41
SwissprotQ9M2D91e-92MYB17_ARATH; Transcription factor MYB17
TrEMBLA0A222UAM71e-123A0A222UAM7_GINBI; R2R3MYB15
STRINGevm.model.supercontig_18.2321e-94(Carica papaya)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61250.11e-94myb domain protein 17