PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00041772-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family MYB
Protein Properties Length: 449aa    MW: 49743.9 Da    PI: 7.0386
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00041772-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding59.19.5e-191562148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                      +g+WT+eEd++l+d+++++G g+W++ +++ g+ R++k+c++rw +yl
  PSME_00041772-RA 15 KGPWTPEEDQKLIDYIQRHGHGSWRALPKRAGLLRCGKSCRLRWTNYL 62
                      79******************************99************97 PP

2Myb_DNA-binding53.55.7e-1768113148
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                       rg ++ eE++ ++++++ lG++ W+tIa +++ gRt++++k++w+++l
  PSME_00041772-RA  68 RGQFSFEEEQTIIELHAVLGNK-WSTIAGHLP-GRTDNEIKNYWNTHL 113
                       899*******************.*********.************996 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.6E-24765IPR009057Homeodomain-like
PROSITE profilePS5129417.3441062IPR017930Myb domain
SuperFamilySSF466892.57E-3112109IPR009057Homeodomain-like
SMARTSM007174.1E-151464IPR001005SANT/Myb domain
PfamPF002491.5E-171562IPR001005SANT/Myb domain
CDDcd001671.96E-121762No hitNo description
PROSITE profilePS5129425.73663117IPR017930Myb domain
Gene3DG3DSA:1.10.10.607.6E-2766117IPR009057Homeodomain-like
SMARTSM007172.2E-1567115IPR001005SANT/Myb domain
PfamPF002493.5E-1568113IPR001005SANT/Myb domain
CDDcd001671.36E-1171113No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 449 aa     Download sequence    Send to blast
MGRTPCCEKN IGLKKGPWTP EEDQKLIDYI QRHGHGSWRA LPKRAGLLRC GKSCRLRWTN  60
YLRPDIKRGQ FSFEEEQTII ELHAVLGNKW STIAGHLPGR TDNEIKNYWN THLKKRLLQM  120
GIDPVTHRPR TDLLGFPNIQ SSIFNTPGLG HMAQWENARL EAEARLTGEY LRQALVMAGN  180
GSAADLFMRP CKSEFGNDQY NFTKNMANPS WLQQPGVALD YKGAVPQSLD QFLQTNVCSA  240
SDINGGGCLS HESGFNIARF ASPCSTLDGI QIKTEPHSLC GPQIMKNENQ FLHSEGDLPK  300
QTMLDMNVGS NILSNINAES KVSFDHDGII TDQGYNSLGQ IENNHSCDNH LSHAATTLWP  360
VNEGQLQVIA SDSMPGLITS TSCTSNNIYS SQPGLIPFLN ATTSSMGDTN SYREAQPEQN  420
QDQAGKQYWS TMLKAVGTIP ASHIISARQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A7e-30131175108B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A222UAA71e-151A0A222UAA7_GINBI; R2R3MYB6
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15310.12e-86myb domain protein 16