PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PSME_00041772-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
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Family | MYB | ||||||||
Protein Properties | Length: 449aa MW: 49743.9 Da PI: 7.0386 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 59.1 | 9.5e-19 | 15 | 62 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd++l+d+++++G g+W++ +++ g+ R++k+c++rw +yl PSME_00041772-RA 15 KGPWTPEEDQKLIDYIQRHGHGSWRALPKRAGLLRCGKSCRLRWTNYL 62 79******************************99************97 PP | |||||||
2 | Myb_DNA-binding | 53.5 | 5.7e-17 | 68 | 113 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg ++ eE++ ++++++ lG++ W+tIa +++ gRt++++k++w+++l PSME_00041772-RA 68 RGQFSFEEEQTIIELHAVLGNK-WSTIAGHLP-GRTDNEIKNYWNTHL 113 899*******************.*********.************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.6E-24 | 7 | 65 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 17.344 | 10 | 62 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.57E-31 | 12 | 109 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 4.1E-15 | 14 | 64 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.5E-17 | 15 | 62 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.96E-12 | 17 | 62 | No hit | No description |
PROSITE profile | PS51294 | 25.736 | 63 | 117 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 7.6E-27 | 66 | 117 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.2E-15 | 67 | 115 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.5E-15 | 68 | 113 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.36E-11 | 71 | 113 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 449 aa Download sequence Send to blast |
MGRTPCCEKN IGLKKGPWTP EEDQKLIDYI QRHGHGSWRA LPKRAGLLRC GKSCRLRWTN 60 YLRPDIKRGQ FSFEEEQTII ELHAVLGNKW STIAGHLPGR TDNEIKNYWN THLKKRLLQM 120 GIDPVTHRPR TDLLGFPNIQ SSIFNTPGLG HMAQWENARL EAEARLTGEY LRQALVMAGN 180 GSAADLFMRP CKSEFGNDQY NFTKNMANPS WLQQPGVALD YKGAVPQSLD QFLQTNVCSA 240 SDINGGGCLS HESGFNIARF ASPCSTLDGI QIKTEPHSLC GPQIMKNENQ FLHSEGDLPK 300 QTMLDMNVGS NILSNINAES KVSFDHDGII TDQGYNSLGQ IENNHSCDNH LSHAATTLWP 360 VNEGQLQVIA SDSMPGLITS TSCTSNNIYS SQPGLIPFLN ATTSSMGDTN SYREAQPEQN 420 QDQAGKQYWS TMLKAVGTIP ASHIISARQ |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 7e-30 | 13 | 117 | 5 | 108 | B-MYB |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A222UAA7 | 1e-151 | A0A222UAA7_GINBI; R2R3MYB6 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G15310.1 | 2e-86 | myb domain protein 16 |