PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PSME_00041736-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
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Family | LBD | ||||||||
Protein Properties | Length: 191aa MW: 21090 Da PI: 5.7274 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 125.7 | 2.2e-39 | 34 | 132 | 1 | 99 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkae 93 +CaaCk++r+kC+k+Cvlapyfp+++p+kf+ v++l+G+ +v+kll++lp e+r da+ss+vyeA r rdPv G+vgvi++lq+++++l+++ PSME_00041736-RA 34 PCAACKIQRKKCTKKCVLAPYFPQDDPQKFRLVQRLYGNVHVIKLLENLPAEKRGDAVSSMVYEASERNRDPVLGCVGVIKDLQNKVAELESQ 126 7******************************************************************************************** PP DUF260 94 lallke 99 la++++ PSME_00041736-RA 127 LASTQA 132 *99886 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 24.302 | 33 | 134 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 3.0E-38 | 34 | 131 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 191 aa Download sequence Send to blast |
MTLALSEKTE SAHSNGKMSD VTASIKPEGT SRTPCAACKI QRKKCTKKCV LAPYFPQDDP 60 QKFRLVQRLY GNVHVIKLLE NLPAEKRGDA VSSMVYEASE RNRDPVLGCV GVIKDLQNKV 120 AELESQLAST QAVLANISQQ HANLLTIFNG SYEPSDPNLY CEAPPDSVDT DMSQSLFGYV 180 DNLPLLELFW P |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 2e-30 | 33 | 127 | 10 | 104 | LOB family transfactor Ramosa2.1 |
5ly0_B | 2e-30 | 33 | 127 | 10 | 104 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Swissprot | Q9LQR0 | 2e-40 | LBD1_ARATH; LOB domain-containing protein 1 | ||||
Swissprot | Q9SK08 | 5e-40 | LBD11_ARATH; LOB domain-containing protein 11 | ||||
TrEMBL | B8LQI9 | 9e-67 | B8LQI9_PICSI; Uncharacterized protein |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G07900.1 | 1e-42 | LOB domain-containing protein 1 |