PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PSME_00041717-RA

Organism

Pseudotsuga menziesii

Taxonomic ID

3357

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga

Family

G2-like

Protein Properties

Length: 700aa MW: 78486.6 Da PI: 6.5649

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PSME_00041717-RA	genome	PRS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	36.6	9.7e-12	89	113	2	26
G2-like 2 prlrWtpeLHerFveaveqLGGsek 26 prlrWtp+LH +Fv+ave+LGG++k PSME_00041717-RA 89 PRLRWTPDLHLCFVHAVERLGGQDK 113 8**********************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	1.9E-10	85	113	IPR009057	Homeodomain-like
PROSITE profile	PS50879	8.755	481	650	IPR002156	Ribonuclease H domain
Gene3D	G3DSA:3.30.420.10	1.2E-8	483	543	IPR012337	Ribonuclease H-like domain
SuperFamily	SSF53098	2.4E-11	485	544	IPR012337	Ribonuclease H-like domain
CDD	cd06222	4.55E-10	487	540	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0004523	Molecular Function	RNA-DNA hybrid ribonuclease activity

Sequence ? help Back to Top
Protein Sequence Length: 700 aa Download sequence Send to blast
MKGNTGQGDE LGHGISRFQL GDDSRKRPLS PCHVDLETAN SYKRVQTEKL ANANANARRS 60 LSTDSGVSEN GGGRNEGLAV RQYVRSKMPR LRWTPDLHLC FVHAVERLGG QDKNAGEGQD 120 YISNYFSDPR AACISYQQNG KQHRHEAWQP FDNENCIKRQ ESSWSGQVDW LLRRTANNAA 180 ANLNSWSCCS RLESNNNNNN NTVPLTMGDP QSDLLYRNSL INPVNLQDKQ YLQALREKRS 240 YNAMRQYNKY CNNKPEVELS DLLSQQRSWR EGIMKSDSCM QGQLAQKLMW DTRTPAPRLV 300 QGRASYCDFK DILENNLAST SDKSFDWEPA YVKRMSVDEL QLEVHEGGGK EAVNGEKSRQ 360 ISEWIQAAEG DHETFDREDC RMYQLQYPSK NQLPGESVQS CCSEDVDSTL SLSLFSSNQK 420 SMSTHESSSN LQAVVDTHEG PDRWPSTDNV KNLHAAPLGI TLDLTMSIGL DEDAFNRWKL 480 ARNDLCLFFD GAAKGNPGLS GCGEVITEAN GNLVSSYARG LGNGTNNKAE LCGLYQGLRI 540 SRTKEESCTW MAWRLDGTSP SRVKRPHSPA RTLLFQDSRL ALQGKYLIFD SALMLSVTES 600 TPGLLLFLPL SPSIALLLIH FAETALKKKL EDSTKVGDKT WDLLNADIRK LRDDHVASAE 660 KMKDFKVEVR TGFKDEENVH GDFGKRLNAL EKAGANMELE

Sequence ? help Back to Top

Protein Sequence Length: 700 aa Download sequence Send to blast

MKGNTGQGDE LGHGISRFQL GDDSRKRPLS PCHVDLETAN SYKRVQTEKL ANANANARRS  60
LSTDSGVSEN GGGRNEGLAV RQYVRSKMPR LRWTPDLHLC FVHAVERLGG QDKNAGEGQD  120
YISNYFSDPR AACISYQQNG KQHRHEAWQP FDNENCIKRQ ESSWSGQVDW LLRRTANNAA  180
ANLNSWSCCS RLESNNNNNN NTVPLTMGDP QSDLLYRNSL INPVNLQDKQ YLQALREKRS  240
YNAMRQYNKY CNNKPEVELS DLLSQQRSWR EGIMKSDSCM QGQLAQKLMW DTRTPAPRLV  300
QGRASYCDFK DILENNLAST SDKSFDWEPA YVKRMSVDEL QLEVHEGGGK EAVNGEKSRQ  360
ISEWIQAAEG DHETFDREDC RMYQLQYPSK NQLPGESVQS CCSEDVDSTL SLSLFSSNQK  420
SMSTHESSSN LQAVVDTHEG PDRWPSTDNV KNLHAAPLGI TLDLTMSIGL DEDAFNRWKL  480
ARNDLCLFFD GAAKGNPGLS GCGEVITEAN GNLVSSYARG LGNGTNNKAE LCGLYQGLRI  540
SRTKEESCTW MAWRLDGTSP SRVKRPHSPA RTLLFQDSRL ALQGKYLIFD SALMLSVTES  600
TPGLLLFLPL SPSIALLLIH FAETALKKKL EDSTKVGDKT WDLLNADIRK LRDDHVASAE  660
KMKDFKVEVR TGFKDEENVH GDFGKRLNAL EKAGANMELE

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G42660.1	6e-13	G2-like family protein