PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00041548-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family Trihelix
Protein Properties Length: 547aa    MW: 60159.8 Da    PI: 8.1083
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00041548-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix54.92.3e-17164252186
          trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeev....skkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                       +W+++ + +L++a++e+  +l+rg+l++ +Weev    s+++++++  +s +qCk+k +nl+kryk ++++  ++ s ++s++p++++++
  PSME_00041548-RA 164 EWSDSAIGCLLDAYTEKYVKLNRGNLRGRDWEEVacivSERCERQKSAKSIEQCKNKVDNLKKRYKSERNRLTSG-SVTVSHWPWYKKMD 252
                       5********************************822225666********************************9.56666********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138372.9E-20162254No hitNo description
Gene3DG3DSA:3.40.1160.109.8E-79306540IPR001048Aspartate/glutamate/uridylate kinase
HamapMF_01220_B37.837308541IPR015963Uridylate kinase, bacteria
SuperFamilySSF536336.41E-63308540IPR001048Aspartate/glutamate/uridylate kinase
CDDcd042544.29E-128311541No hitNo description
TIGRFAMsTIGR020755.2E-81311540IPR015963Uridylate kinase, bacteria
PfamPF006963.0E-25312520IPR001048Aspartate/glutamate/uridylate kinase
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006221Biological Processpyrimidine nucleotide biosynthetic process
GO:0005737Cellular Componentcytoplasm
GO:0033862Molecular FunctionUMP kinase activity
Sequence ? help Back to Top
Protein Sequence    Length: 547 aa     Download sequence    Send to blast
MACEEDFVML EAAHSHQAHQ LQHHHHHHPQ AFQPPQFLPN KQQQTLPHGH IDAHGLNSVE  60
SRKKAPGEDE DYSDAAFCSQ GDPKCPPDFV QEIAPHHHHH QHECFGDDGF RTGDEGKPSG  120
AKSRSRAGQG KLKDSREELS DGGTYYHKKP KGGGSGDYKK DREEWSDSAI GCLLDAYTEK  180
YVKLNRGNLR GRDWEEVACI VSERCERQKS AKSIEQCKNK VDNLKKRYKS ERNRLTSGSV  240
TVSHWPWYKK MDQIVGSSVS KTVSDEDKSM GGANSAMNMA RPAKRFAAIT PSPVGLSNNL  300
KTKTLPTPRW RRVLLKISGT ALAGNAQNVD PKVTSLIARE IAAVNRLGVE VAIVVGGRNF  360
FCGASWVRST GLDRASADQI GMMATVMNSI ILQADMENLG IHTRVQTAFK MSEVAEPYIQ  420
RRAIRHLEKG RVVIFGAGTG NPFFSTDTAA ALRASEIHAE VVLKGTNVDG VYDCDPRKND  480
VVLDHIAYRD FVTKGLSATA MDTTAITLCE ENGIPIVIFN LHEPGNISRA LTGDLIGTLI  540
DQTGKIG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3nwy_A1e-7131054050279Uridylate kinase
3nwy_B1e-7131054050279Uridylate kinase
3nwy_C1e-7131054050279Uridylate kinase
3nwy_D1e-7131054050279Uridylate kinase
3nwy_E1e-7131054050279Uridylate kinase
3nwy_F1e-7131054050279Uridylate kinase
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00340DAPTransfer from AT3G10030Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1184600.0BT118460.1 Picea glauca clone GQ04006_K06 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010278264.10.0PREDICTED: uncharacterized protein LOC104612522 isoform X1
TrEMBLA0A0D6R6P90.0A0A0D6R6P9_ARACU; Uncharacterized protein
STRINGXP_010278264.10.0(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10030.11e-174Trihelix family protein