PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00041507-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family MYB
Protein Properties Length: 308aa    MW: 35158.5 Da    PI: 8.287
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00041507-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.17.2e-171561248
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding  2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                      g+WT+ Ed +l ++++ +G g Wk Ia++ g++R++k+c++rw++yl
  PSME_00041507-RA 15 GAWTAMEDTILSEYIRIHGDGGWKNIAKRAGLKRCAKSCRLRWLNYL 61
                      89*******************************************97 PP
2Myb_DNA-binding48.81.6e-1567111147
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                       rg+ + +E++l+++++++lG++ W++Ia +++ gRt++++k++w+++
  PSME_00041507-RA  67 RGNISLDEEDLIIRLHRLLGNR-WSLIAGRLP-GRTDNEIKNYWNTH 111
                       788999****************.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.84961IPR017930Myb domain
SuperFamilySSF466891.29E-2712108IPR009057Homeodomain-like
SMARTSM007171.4E-131363IPR001005SANT/Myb domain
PfamPF002492.6E-151561IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.6E-211568IPR009057Homeodomain-like
CDDcd001671.64E-101661No hitNo description
PROSITE profilePS5129424.38362116IPR017930Myb domain
SMARTSM007171.1E-1466114IPR001005SANT/Myb domain
PfamPF002495.8E-1467111IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.1E-2369116IPR009057Homeodomain-like
CDDcd001672.71E-1071112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 308 aa     Download sequence    Send to blast
MSRTPWPSKE GLNHGAWTAM EDTILSEYIR IHGDGGWKNI AKRAGLKRCA KSCRLRWLNY  60
LRPDIKRGNI SLDEEDLIIR LHRLLGNRWS LIAGRLPGRT DNEIKNYWNT HITKKIRTTM  120
NECQQKPSQN FSRSSKSPVP VQNRVFKVTA VKITKAVRHS EMVRPNGYNG NDCSNRISVE  180
AFNLCTDKES RKSSWRDPLV NDSIEAEQSE RTVSAMADKP VQTAAINSTT SMWNLADQQS  240
TDCNHVAGDA ANVPESLLNL NDISSPQCSL LPSPSRDFAS VEFYREMEEF YDNAQQLDWI  300
HELDHLQQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C4e-231211625128MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator, when associated with BHLH002/EGL3/MYC146, BHLH012/MYC1 or BHLH042/TT8. {ECO:0000269|PubMed:15361138}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023891575.11e-66myb-related protein 308-like
SwissprotQ388507e-54MYB5_ARATH; Transcription repressor MYB5
TrEMBLB8LMJ61e-141B8LMJ6_PICSI; Uncharacterized protein
STRINGXP_009372342.11e-65(Pyrus x bretschneideri)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13540.13e-56myb domain protein 5
Publications ? help Back to Top
  1. Ranocha P,Francoz E,Burlat V,Dunand C
    Expression of PRX36, PMEI6 and SBT1.7 is controlled by complex transcription factor regulatory networks for proper seed coat mucilage extrusion.
    Plant Signal Behav, 2014. 9(11): p. e977734
    [PMID:25531128]