PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PSME_00041406-RA

Organism

Pseudotsuga menziesii

Taxonomic ID

3357

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga

Family

SBP

Protein Properties

Length: 427aa MW: 46230.8 Da PI: 8.3331

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PSME_00041406-RA	genome	PRS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	34.7	4.5e-11	48	73	53	78
TT--SS--S-STTTT-------S--- CS SBP 53 sefDeekrsCrrrLakhnerrrkkqa 78 efDe krsCr+rLa+hn+rrrk+q+ PSME_00041406-RA 48 AEFDEVKRSCRKRLADHNRRRRKPQT 73 79*********************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51141	9.237	1	71	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	4.4E-5	48	70	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	1.8E-8	48	76	IPR004333	Transcription factor, SBP-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 427 aa Download sequence Send to blast
MPQHYYPNLS RSSSRILDAS PVISANFIPR PPALSQAVSN SVSANSAAEF DEVKRSCRKR 60 LADHNRRRRK PQTNTIVPAV SSAEAATALK VEDDDNNVSG SCNNTSRGTV QTSVAAAASP 120 NTKGSQMNNN SNSNSNTTTT NNPMLQQPNS QKVPVANQQY MQQQNGGGHK GPNLSLSSPS 180 VGMSLCNQRQ TTAQDYSGLE LALPWLRTTS DYGGSSHRPP PAMDNILHPI ISHEKANVEA 240 FSASSVQNFL PLTGSMSSRE LGSSDSASSL EAGQQMFSLL EPAEHHNRTE EQAQTARPVE 300 YLSHRHQGGL NSKEPVDGNP EVKFSDMQNC LRPFGQSIYD GSMIGFTDEP VELLGLVSPK 360 SMPQVSGTIA VKSAFLMLFR PCEGCICLIQ FRSLAMIIIR AIPLLLNSTL HFSIFCGVKS 420 CNRSPRQ

Sequence ? help Back to Top

Protein Sequence Length: 427 aa Download sequence Send to blast

MPQHYYPNLS RSSSRILDAS PVISANFIPR PPALSQAVSN SVSANSAAEF DEVKRSCRKR  60
LADHNRRRRK PQTNTIVPAV SSAEAATALK VEDDDNNVSG SCNNTSRGTV QTSVAAAASP  120
NTKGSQMNNN SNSNSNTTTT NNPMLQQPNS QKVPVANQQY MQQQNGGGHK GPNLSLSSPS  180
VGMSLCNQRQ TTAQDYSGLE LALPWLRTTS DYGGSSHRPP PAMDNILHPI ISHEKANVEA  240
FSASSVQNFL PLTGSMSSRE LGSSDSASSL EAGQQMFSLL EPAEHHNRTE EQAQTARPVE  300
YLSHRHQGGL NSKEPVDGNP EVKFSDMQNC LRPFGQSIYD GSMIGFTDEP VELLGLVSPK  360
SMPQVSGTIA VKSAFLMLFR PCEGCICLIQ FRSLAMIIIR AIPLLLNSTL HFSIFCGVKS  420
CNRSPRQ

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	53	70	KRSCRKRLADHNRRRRKP

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G50670.1	2e-08	SBP family protein