PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PSME_00041383-RA

Organism

Pseudotsuga menziesii

Taxonomic ID

3357

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga

Family

bHLH

Protein Properties

Length: 585aa MW: 64034.8 Da PI: 7.7164

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PSME_00041383-RA	genome	PRS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	28.6	2.5e-09	518	558	11	55
HHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 11 rRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 RR ri +++ +L+el+P+ k + a++L +AveY+k Lq PSME_00041383-RA 518 VRRTRISDRIRKLQELVPNM----EKQTNTADMLDEAVEYVKLLQ 558 6****************7....467*************998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	11.801	507	557	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.1E-5	513	563	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.96E-12	517	571	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	7.52E-8	519	562	No hit	No description
Pfam	PF00010	2.3E-6	519	558	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	7.5E-15	520	574	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 585 aa Download sequence Send to blast
MSRSSQPLQG FRSFGDMYNA QSFPAGLSLP STSLGCPGTN GQVPLGLFQG STDSRKAQQM 60 LQQLRKQALI NLDCRVSDCN ISHSGAMMAP VGLPENFQAS AGLMRYNSAP GSFLASLEDD 120 GNSILPHVHV AGPDNALSRI LSNDSSLTAE SNSGAMKHND SSQSNKTEPE KHLEEHNNYS 180 RMAVHNSSPR KRISSNIEEE DLGKHKRVAS VLENGMEASQ NSFCSSQMSK MCQAQGPQSG 240 EQLINNTFKQ NPVLYNAIDP SSERAAKLPL SATKSSLIRH SSSPAEALSR MTSDGQRIPE 300 NGYLEGVMTS GKMGMSTLAS ENNSYGTGID PNRVSQQMNF SRQSSSPAGL LTQLSMDMEM 360 PEIVDKLNMN MGRPSRESLT RCSSDSARLG NVGQGQGYIS SLSTRSWEDG TMLSGNYEGI 420 QNDTHFSARK RGRDIDEKMI LGLNLPEKLE GESRRHAASA LANHHFGLFE STSSEIALEK 480 ILEESVPCRI RAKRGCATHP RSIAERIQAI TKIVCLQVRR TRISDRIRKL QELVPNMEKQ 540 TNTADMLDEA VEYVKLLQKR VQELSDKQCK CECASKEHAD VVNKA

Sequence ? help Back to Top

Protein Sequence Length: 585 aa Download sequence Send to blast

MSRSSQPLQG FRSFGDMYNA QSFPAGLSLP STSLGCPGTN GQVPLGLFQG STDSRKAQQM  60
LQQLRKQALI NLDCRVSDCN ISHSGAMMAP VGLPENFQAS AGLMRYNSAP GSFLASLEDD  120
GNSILPHVHV AGPDNALSRI LSNDSSLTAE SNSGAMKHND SSQSNKTEPE KHLEEHNNYS  180
RMAVHNSSPR KRISSNIEEE DLGKHKRVAS VLENGMEASQ NSFCSSQMSK MCQAQGPQSG  240
EQLINNTFKQ NPVLYNAIDP SSERAAKLPL SATKSSLIRH SSSPAEALSR MTSDGQRIPE  300
NGYLEGVMTS GKMGMSTLAS ENNSYGTGID PNRVSQQMNF SRQSSSPAGL LTQLSMDMEM  360
PEIVDKLNMN MGRPSRESLT RCSSDSARLG NVGQGQGYIS SLSTRSWEDG TMLSGNYEGI  420
QNDTHFSARK RGRDIDEKMI LGLNLPEKLE GESRRHAASA LANHHFGLFE STSSEIALEK  480
ILEESVPCRI RAKRGCATHP RSIAERIQAI TKIVCLQVRR TRISDRIRKL QELVPNMEKQ  540
TNTADMLDEA VEYVKLLQKR VQELSDKQCK CECASKEHAD VVNKA

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G35460.1	1e-42	bHLH family protein