PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PSME_00041316-RA

Organism

Pseudotsuga menziesii

Taxonomic ID

3357

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga

Family

Dof

Protein Properties

Length: 498aa MW: 53404.6 Da PI: 5.9705

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PSME_00041316-RA	genome	PRS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	127.8	3.2e-40	130	189	2	61
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 ++k l+cprC+s++tkfCyynny+++qPr+fCk+C+ryWt+GG+lrnvPvG+grrknk+s PSME_00041316-RA 130 PDKLLPCPRCESMDTKFCYYNNYNVNQPRHFCKNCQRYWTAGGTLRNVPVGAGRRKNKHS 189 78999*****************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	6.0E-31	127	187	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	7.6E-33	132	188	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.012	134	188	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	136	172	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 498 aa Download sequence Send to blast
MERGELRGDL QFRDWDFREE RFDLILPFTM SKDCVVVCMN GDDGIHGHAD EKGFDPGFKL 60 FGRTIPVRPV EEVKQETGSS SVQQPGAHKE ESPEGEEEIQ QETGSSSEDG KDESLNEGKN 120 GEQKTVLKKP DKLLPCPRCE SMDTKFCYYN NYNVNQPRHF CKNCQRYWTA GGTLRNVPVG 180 AGRRKNKHSI TASTVPSHYR QVISAASECG LGVRTDDQEA GVDQVMIPCA ALPASCVRPL 240 KVAGSRVQVV PMDVLESGNS TGTVLNFGSE VRNKIQLGGD SDPRIEKSTM ESSSLSGKET 300 ACQMNLAAPR PPMDPPPNWA NGAAGAAFFG GAWPYGWNFG NPAWNAAAAA LAPGWPGLSW 360 PMVAGSYFGP PPPPGWAPAP APWVPGPWGV AAAASNNSTA ADSGPPTLGK RPQSEDGCLW 420 VPKTLRIDDP GEAAKSSIWT TLGLGDKRES AITSGGIFKA FQPKTQGAKD SRNVASPSQA 480 LQANPAAFSR SISFHESS

Sequence ? help Back to Top

Protein Sequence Length: 498 aa Download sequence Send to blast

MERGELRGDL QFRDWDFREE RFDLILPFTM SKDCVVVCMN GDDGIHGHAD EKGFDPGFKL  60
FGRTIPVRPV EEVKQETGSS SVQQPGAHKE ESPEGEEEIQ QETGSSSEDG KDESLNEGKN  120
GEQKTVLKKP DKLLPCPRCE SMDTKFCYYN NYNVNQPRHF CKNCQRYWTA GGTLRNVPVG  180
AGRRKNKHSI TASTVPSHYR QVISAASECG LGVRTDDQEA GVDQVMIPCA ALPASCVRPL  240
KVAGSRVQVV PMDVLESGNS TGTVLNFGSE VRNKIQLGGD SDPRIEKSTM ESSSLSGKET  300
ACQMNLAAPR PPMDPPPNWA NGAAGAAFFG GAWPYGWNFG NPAWNAAAAA LAPGWPGLSW  360
PMVAGSYFGP PPPPGWAPAP APWVPGPWGV AAAASNNSTA ADSGPPTLGK RPQSEDGCLW  420
VPKTLRIDDP GEAAKSSIWT TLGLGDKRES AITSGGIFKA FQPKTQGAKD SRNVASPSQA  480
LQANPAAFSR SISFHESS

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AY957462	0.0	AY957462.1 Picea abies Dof domain zinc finger DNA-binding protein mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	Q14DX9	0.0	Q14DX9_PICAB; Dof domain zinc finger DNA-binding protein

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69570.1	3e-38	Dof family protein