PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PSME_00041209-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
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Family | NF-YA | ||||||||
Protein Properties | Length: 151aa MW: 17701.6 Da PI: 10.2147 | ||||||||
Description | NF-YA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | CBFB_NFYA | 26.4 | 2.3e-08 | 16 | 49 | 3 | 30 |
CBFB_NFYA 3 plYVNaKQyqrIlkRRqkRakleeekk......l 30 ++VNaKQy++IlkRRq R+ + +kk PSME_00041209-RA 16 LVFVNAKQYKGILKRRQIRKLKQPHKKrlamilP 49 58*****************977665554555540 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51152 | 9.722 | 13 | 34 | IPR001289 | Nuclear transcription factor Y subunit A |
Pfam | PF02045 | 8.6E-6 | 17 | 41 | IPR001289 | Nuclear transcription factor Y subunit A |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 151 aa Download sequence Send to blast |
MADFLQKDTG SIEEKLVFVN AKQYKGILKR RQIRKLKQPH KKRLAMILPK MNSVSSKAPH 60 SRVKQTKNFK DLEACLNKSE VFGTNIEGSK EDIHDSKDLY SPTSTPLMWS FELYVKELMS 120 MKMSLETLEE KRWYEGNKVN KIVEFKSRLE E |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 29 | 42 | RRQIRKLKQPHKKR |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |