PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00041150-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family WRKY
Protein Properties Length: 352aa    MW: 40341.2 Da    PI: 9.2217
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00041150-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY90.11.7e-28215272359
                       -SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
              WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                       Dgy+WrKYG+K+ k ++ prsYY+C+ a gCpvkk+v+r+aed++vv++tY+geH+h+
  PSME_00041150-RA 215 DGYQWRKYGKKMTKRNPLPRSYYKCAWApGCPVKKQVQRCAEDQTVVITTYKGEHTHS 272
                       9*************************999****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.809.1E-31202272IPR003657WRKY domain
SuperFamilySSF1182906.15E-26208273IPR003657WRKY domain
PROSITE profilePS5081126.544208274IPR003657WRKY domain
SMARTSM007742.1E-32213273IPR003657WRKY domain
PfamPF031062.7E-24215271IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 352 aa     Download sequence    Send to blast
MPRIQTQTVN ISLDMEEIEG HKNKKFSHMA ALFLCLILLF LTDFMTCNHF LQITMLMAEI  60
DLINEENRTL KCTLKHMNRK YNNLQKHIMS FVEHRKDVDK RLILNPDHQG NDVFDARYSR  120
SEVDPQYDHQ RGCEREKKNA KFMDDQGLYS KSKRTMNYLE SAQIDNRINS SIDDSPCCHK  180
KSLNKKLHAL SWGSTAAPQR IVCTRTSSEP AVTGDGYQWR KYGKKMTKRN PLPRSYYKCA  240
WAPGCPVKKQ VQRCAEDQTV VITTYKGEHT HSLGSFPMAA LYAGSSNLLT GEGRNCTDHQ  300
FIPCIATIST STPFPTITLD FTDNWPNSGL QLQPPHLAFY RLRKSGLVPK SP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A7e-21205273976Probable WRKY transcription factor 4
2lex_A7e-21205273976Probable WRKY transcription factor 4
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A482CVK91e-100A0A482CVK9_9SPER; WRKY164
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G04450.19e-30WRKY family protein