PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00041119-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family LBD
Protein Properties Length: 362aa    MW: 39650.8 Da    PI: 8.2759
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00041119-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF2601025.2e-3231132197
            DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqle 88 
                       +C++C+vlr++C++ C+l+p++     +++q +++ +v+k+FG++ ++ +++a+p+++r+++++sl+yeA+ r+ +Pv+Gavg+++++++ql+
  PSME_00041119-RA  31 SCNGCRVLRKGCSDTCILRPCLqwiesAEAQGHATVFVAKFFGRAGLMAFISAVPDHQRPALFQSLLYEACGRTVNPVNGAVGLLWSGNWQLC 123
                       6*********************9999777889************************************************************* PP

            DUF260  89 qlkaelall 97 
                       q+++e++l 
  PSME_00041119-RA 124 QAAVETVLK 132
                       ***998876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089119.68430136IPR004883Lateral organ boundaries, LOB
PfamPF031951.8E-2631130IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006807Biological Processnitrogen compound metabolic process
GO:0060776Biological Processsimple leaf morphogenesis
Sequence ? help Back to Top
Protein Sequence    Length: 362 aa     Download sequence    Send to blast
MTATTGTGSS ARDLSIFFQR KQDADGRKRM SCNGCRVLRK GCSDTCILRP CLQWIESAEA  60
QGHATVFVAK FFGRAGLMAF ISAVPDHQRP ALFQSLLYEA CGRTVNPVNG AVGLLWSGNW  120
QLCQAAVETV LKGGTLRPPQ SSSVIPTCST RPSLMNSLSA NLRVNSNVNN INSSSRLSLE  180
VGKARPVNEM REMYTVKPEL DFPLNRPQES CNPHQPWAAK VKSEPHDLSL CEAFQAVRHN  240
QKIIHLPSSE MAASPRRVRQ RIEGINEANH QDLSNSNSDD DKSPGDFDFI PNIAMEPKAN  300
LDLTLNFEVS SSSHFKRRVS SPSIVSVNSE GSVTSLESGS LPVPNEKDSY VGTEHKVLAL  360
FP
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1194650.0BT119465.1 Picea glauca clone GQ04106_A22 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A3G6JFC70.0A0A3G6JFC7_PINTA; ASYMMETRIC LEAVES 2-like protein 39
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67420.14e-70LOB domain-containing protein 37