PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00041105-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family bHLH
Protein Properties Length: 338aa    MW: 38735.9 Da    PI: 7.6375
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00041105-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH43.55.7e-14122173154
                       CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
               HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                       +++ hn++Er RR++++  ++eLr+llP++  ++++Kls  +++ +++ YI +L
  PSME_00041105-RA 122 KKAIHNAMERHRRNKLKVLYSELRSLLPNP--NTKRKLSIPDTVSRVISYIPEL 173
                       5778*************************6..49999**************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.01E-14118190IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.557121173IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.9E-11122173IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.6E-12122194IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000839.20E-12122178No hitNo description
SMARTSM003535.7E-11127179IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 338 aa     Download sequence    Send to blast
MMGLFPFFSS IQTSAPAPAP APAAYNEAYN LEYPSNSLLR EAEMNAQDQP ATINIFSPSC  60
WFQIDQQQPA ESDNTVMEYT SQFGMHDNNY QYADQLLPMD LDQLQHPNND EESAPNSKDY  120
TKKAIHNAME RHRRNKLKVL YSELRSLLPN PNTKRKLSIP DTVSRVISYI PELRKELEEL  180
RKQRNELLAA NRRISKSSAV ISKSCARAYG HHEFMNDFRH CPRADLSSPI HINVTVNTDL  240
GNSELIITIY AGRAGFLFST LLLVLEKEGL DLLNSSTFLS KHQVCHNLHL QMIGKSEVDT  300
DLLRKKFVTM LCRKSWQDVG FYKVKDQRNQ ASFNMLFQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04150.12e-13bHLH family protein