PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PSME_00041099-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
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Family | MYB | ||||||||
Protein Properties | Length: 226aa MW: 26169.7 Da PI: 6.5177 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 45.6 | 1.7e-14 | 23 | 71 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48 r++WT+eEd++l ++++ +G + W++++ + g +R++k+c++rw +yl PSME_00041099-RA 23 RMAWTAEEDKILREYINNHGLErGWSSVPLKAGINRSGKSCRLRWMNYL 71 789*****************9999*********99************97 PP | |||||||
2 | Myb_DNA-binding | 54.5 | 2.6e-17 | 77 | 122 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+ +t+E+el+++++++lG++ W++Ia +++ gRt++++k++w+++l PSME_00041099-RA 77 RGNISTDEEELIIRLHRLLGNR-WSLIAGRLP-GRTDNEIKNYWNTHL 122 7899******************.*********.************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 12.406 | 18 | 71 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.47E-26 | 21 | 118 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.3E-10 | 22 | 73 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.2E-14 | 23 | 71 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 5.7E-22 | 25 | 78 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 8.31E-9 | 25 | 71 | No hit | No description |
PROSITE profile | PS51294 | 25.988 | 72 | 126 | IPR017930 | Myb domain |
SMART | SM00717 | 2.4E-16 | 76 | 124 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.8E-15 | 77 | 122 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.2E-25 | 79 | 126 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.86E-11 | 81 | 122 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 226 aa Download sequence Send to blast |
MEISFDCRMG RPPRCSTEEG LNRMAWTAEE DKILREYINN HGLERGWSSV PLKAGINRSG 60 KSCRLRWMNY LSPNIKRGNI STDEEELIIR LHRLLGNRWS LIAGRLPGRT DNEIKNYWNT 120 HLKKKVAIRL NKRDRIQDKM TEEGTHFGPA MDLVKENVSI DNHLSDEEWR TVLEEGLFSN 180 SLSGIPDLSV EYWRSPHITS QLAVLDLGCA FDFFPPPTID FQTEEI |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 3e-24 | 21 | 126 | 25 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator, when associated with BHLH2/EGL3/MYC146, BHLH12/MYC1, or BHLH42/TT8. Involved in the control of flavonoid late metabolism in developing siliques. Plays a key role in determining the tissue-specific activation of leucoanthocyanidin reductase (BANYULS). {ECO:0000269|PubMed:15361138}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002275148.1 | 2e-57 | PREDICTED: myb-related protein Zm38 | ||||
Swissprot | Q9FJA2 | 1e-49 | TT2_ARATH; Transcription factor TT2 | ||||
TrEMBL | B8LLG1 | 6e-57 | B8LLG1_PICSI; Uncharacterized protein | ||||
TrEMBL | K9LYX2 | 2e-57 | K9LYX2_9ASPA; R2R3 MYB (Fragment) | ||||
STRING | VIT_09s0002g01400.t01 | 2e-56 | (Vitis vinifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G22640.1 | 5e-43 | myb domain protein 3 |