PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00040944-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family G2-like
Protein Properties Length: 539aa    MW: 60176.8 Da    PI: 7.4374
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00040944-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like107.29.2e-34128182155
           G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                       kprl+Wt+eLHerFv+av+qLGG++kAtPk+++++m+vkgLtl+h+kSHLQkYRl
  PSME_00040944-RA 128 KPRLKWTTELHERFVDAVSQLGGPDKATPKSVMRVMGVKGLTLYHLKSHLQKYRL 182
                       79****************************************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.753125185IPR017930Myb domain
Gene3DG3DSA:1.10.10.604.9E-32126182IPR009057Homeodomain-like
SuperFamilySSF466892.87E-16127182IPR009057Homeodomain-like
TIGRFAMsTIGR015579.4E-24128183IPR006447Myb domain, plants
PfamPF002493.8E-9130181IPR001005SANT/Myb domain
PfamPF143791.8E-23229275IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 539 aa     Download sequence    Send to blast
MNLLFMVVGV GGLMGLAVVY WQKGNHQREE RWVTEIPKGG LSMMSFSVHG GVQFLLYSPP  60
VQLPYMSVLG DRQQAEKKAR KNFSDKMYQV KNTVSSNGSL PSHSERPLLL QGSNGPGEMG  120
LVLSTDPKPR LKWTTELHER FVDAVSQLGG PDKATPKSVM RVMGVKGLTL YHLKSHLQKY  180
RLGKHLHMVV NLDNNKHGCS AAASKTSEMQ GASSAASSMI GANKTDASQI NEAVRMQIEV  240
QRRLHEQIEV QQHLQLRIEA QGKYLQSVLE KARETLAGHN LGSVGIEAAR AEISELASKV  300
SSECLNNAFS SLPEMPSLYK QQQHMVQPVH SLNQQSQVTD YSMESCLTSN ESSEKNLDRN  360
MQNAGKKRLR TFQNRNIPFW QTETREDASL RELSATQLSW EENLKEDEKF LSSSANPKDS  420
DRNSIPTKGN LRERITSFRV QTEENGYGMS DAREKQMEVN GSCVGQQVIK PEVSRSFSLQ  480
EVCQKGELAG LHRDEDESPS VSFNKLSKLT EELDLNANDD TSIASNCREF DLNGFGWSI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4r_A6e-19128185158Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B6e-19128185158Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C6e-19128185158Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D6e-19128185158Protein PHOSPHATE STARVATION RESPONSE 1
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00331DAPTransfer from AT3G04030Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1093820.0BT109382.1 Picea glauca clone GQ03207_M13 mRNA sequence.
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04030.33e-85G2-like family protein