PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PSME_00040944-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
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Family | G2-like | ||||||||
Protein Properties | Length: 539aa MW: 60176.8 Da PI: 7.4374 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 107.2 | 9.2e-34 | 128 | 182 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprl+Wt+eLHerFv+av+qLGG++kAtPk+++++m+vkgLtl+h+kSHLQkYRl PSME_00040944-RA 128 KPRLKWTTELHERFVDAVSQLGGPDKATPKSVMRVMGVKGLTLYHLKSHLQKYRL 182 79****************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 12.753 | 125 | 185 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.9E-32 | 126 | 182 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 2.87E-16 | 127 | 182 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 9.4E-24 | 128 | 183 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 3.8E-9 | 130 | 181 | IPR001005 | SANT/Myb domain |
Pfam | PF14379 | 1.8E-23 | 229 | 275 | IPR025756 | MYB-CC type transcription factor, LHEQLE-containing domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 539 aa Download sequence Send to blast |
MNLLFMVVGV GGLMGLAVVY WQKGNHQREE RWVTEIPKGG LSMMSFSVHG GVQFLLYSPP 60 VQLPYMSVLG DRQQAEKKAR KNFSDKMYQV KNTVSSNGSL PSHSERPLLL QGSNGPGEMG 120 LVLSTDPKPR LKWTTELHER FVDAVSQLGG PDKATPKSVM RVMGVKGLTL YHLKSHLQKY 180 RLGKHLHMVV NLDNNKHGCS AAASKTSEMQ GASSAASSMI GANKTDASQI NEAVRMQIEV 240 QRRLHEQIEV QQHLQLRIEA QGKYLQSVLE KARETLAGHN LGSVGIEAAR AEISELASKV 300 SSECLNNAFS SLPEMPSLYK QQQHMVQPVH SLNQQSQVTD YSMESCLTSN ESSEKNLDRN 360 MQNAGKKRLR TFQNRNIPFW QTETREDASL RELSATQLSW EENLKEDEKF LSSSANPKDS 420 DRNSIPTKGN LRERITSFRV QTEENGYGMS DAREKQMEVN GSCVGQQVIK PEVSRSFSLQ 480 EVCQKGELAG LHRDEDESPS VSFNKLSKLT EELDLNANDD TSIASNCREF DLNGFGWSI |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4r_A | 6e-19 | 128 | 185 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 6e-19 | 128 | 185 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 6e-19 | 128 | 185 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 6e-19 | 128 | 185 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00331 | DAP | Transfer from AT3G04030 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT109382 | 0.0 | BT109382.1 Picea glauca clone GQ03207_M13 mRNA sequence. |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G04030.3 | 3e-85 | G2-like family protein |