PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PSME_00040791-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
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Family | NAC | ||||||||
Protein Properties | Length: 297aa MW: 33505.5 Da PI: 8.5849 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 118.5 | 6.5e-37 | 1 | 96 | 36 | 128 |
NAM 36 evdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk...kgelvglkktLvfykgrapkgektdWvmhe 125 e+d+yk++Pw+Lp k++ +e+ewyfFs+rd+ky++g r+nra++sgyWkatg+dk++l++ ++++vg+kk Lvfy gr pkg kt+W+mhe PSME_00040791-RA 1 EIDLYKFDPWELPGKATFGEQEWYFFSPRDRKYPNGARSNRAATSGYWKATGTDKPILTStsgGTQKVGVKKALVFYGGRPPKGIKTNWIMHE 93 689**********8888999**************************************998888899************************** PP NAM 126 yrl 128 yrl PSME_00040791-RA 94 YRL 96 *98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 47.089 | 1 | 126 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 5.1E-44 | 1 | 126 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.8E-15 | 21 | 96 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 297 aa Download sequence Send to blast |
EIDLYKFDPW ELPGKATFGE QEWYFFSPRD RKYPNGARSN RAATSGYWKA TGTDKPILTS 60 TSGGTQKVGV KKALVFYGGR PPKGIKTNWI MHEYRLADSG ARPSSFPNKK GSLRLDDWVL 120 CLIYKKNDEV MTSLPNIEQQ NKLQLPKLGP FSGLLETDDP FIEGLLNYEA MDGNGNISRL 180 PHQVHSSDLS HNNFSNSNDN NSDCQFEVVP KQEALAVDNE NKFNSLKRTL SLAAFGDEEI 240 HSAKRFNVMQ NNYSYNVNNN SRPSDHQNAL RREEQGKMAI YRKALNGVTL GLSLSEM |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 1e-55 | 1 | 127 | 51 | 166 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 1e-55 | 1 | 127 | 51 | 166 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 1e-55 | 1 | 127 | 51 | 166 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 1e-55 | 1 | 127 | 51 | 166 | NO APICAL MERISTEM PROTEIN |
3swm_A | 1e-55 | 1 | 127 | 54 | 169 | NAC domain-containing protein 19 |
3swm_B | 1e-55 | 1 | 127 | 54 | 169 | NAC domain-containing protein 19 |
3swm_C | 1e-55 | 1 | 127 | 54 | 169 | NAC domain-containing protein 19 |
3swm_D | 1e-55 | 1 | 127 | 54 | 169 | NAC domain-containing protein 19 |
3swp_A | 1e-55 | 1 | 127 | 54 | 169 | NAC domain-containing protein 19 |
3swp_B | 1e-55 | 1 | 127 | 54 | 169 | NAC domain-containing protein 19 |
3swp_C | 1e-55 | 1 | 127 | 54 | 169 | NAC domain-containing protein 19 |
3swp_D | 1e-55 | 1 | 127 | 54 | 169 | NAC domain-containing protein 19 |
4dul_A | 1e-55 | 1 | 127 | 51 | 166 | NAC domain-containing protein 19 |
4dul_B | 1e-55 | 1 | 127 | 51 | 166 | NAC domain-containing protein 19 |
Search in ModeBase |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT111167 | 1e-116 | BT111167.1 Picea glauca clone GQ03233_M04 mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002284654.2 | 2e-80 | PREDICTED: NAC transcription factor 56 | ||||
TrEMBL | A0A411JJP0 | 3e-82 | A0A411JJP0_CUNLA; NAC domain-containing protein | ||||
STRING | VIT_19s0014g03300.t01 | 6e-80 | (Vitis vinifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G15510.1 | 3e-68 | NAC domain containing protein 2 |