PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00040668-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family Dof
Protein Properties Length: 383aa    MW: 41987.6 Da    PI: 7.4356
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00040668-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof124.92.6e-3951110362
            zf-Dof   3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 
                       ++alkcprCds ntkfCyynnyslsqPr+fCk+CrryWt+GGalrnvPvGgg+rknk+++
  PSME_00040668-RA  51 QQALKCPRCDSPNTKFCYYNNYSLSQPRHFCKTCRRYWTRGGALRNVPVGGGCRKNKRTK 110
                       7899*****************************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074781.0E-2750108IPR003851Zinc finger, Dof-type
PfamPF027016.5E-3352108IPR003851Zinc finger, Dof-type
PROSITE profilePS5088429.68354108IPR003851Zinc finger, Dof-type
PROSITE patternPS0136105692IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010052Biological Processguard cell differentiation
GO:0010118Biological Processstomatal movement
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:1902066Biological Processregulation of cell wall pectin metabolic process
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 383 aa     Download sequence    Send to blast
MSSVQICMDS STEWQQQNGM QERGLKSPDD MMSACSRPLL ERRTVKQPTD QQALKCPRCD  60
SPNTKFCYYN NYSLSQPRHF CKTCRRYWTR GGALRNVPVG GGCRKNKRTK RGGLDIPGGG  120
GLTSSNSANP SSAHDLVTNP FHHAPNGSVY YGLPSSGNEI SLAFARIQQA ARLGDRSAMA  180
NCKNSSDYNL GLNTQSSMPS SHLSALSALK SSQLSGLEFP ITSGRQDHAS EDFCSFLETN  240
PHMPGPININ PPITATTSNL SMFSASEDHP GQNNIDSSIH WNRLNDQPRI PLPLLHEGHH  300
PDDTHPLGPN FNSEHHHHTI SKPKVKTEEP ENRLVSEWQI IPGAAPSEML FQTAGDHADY  360
WNGGAWPDLM TSYVGSSSIG PIV
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC6886760.0KC688676.1 Pinus pinaster Dof1 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLT2B6N60.0T2B6N6_PINPS; Dof1
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65590.11e-35Dof family protein