PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PSME_00040628-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
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Family | NAC | ||||||||
Protein Properties | Length: 225aa MW: 25362.8 Da PI: 6.5107 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 25.5 | 3.7e-08 | 103 | 144 | 87 | 128 |
NAM 87 gkdkevlskkgelvglkktLvfykg.rapkgektdWvmheyrl 128 g++++v++ +ge++g+kk++v+ + + +k+ kt Wvm +y+l PSME_00040628-RA 103 GNTRKVYE-NGEQIGCKKIMVLNMAlKGKKPLKTIWVMYQYHL 144 889****9.999**********9554777778*********98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD315657 | 1.0E-4 | 6 | 40 | IPR020529 | Origin recognition complex, subunit 6, metazoa/plant |
SuperFamily | SSF101941 | 2.09E-19 | 40 | 163 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.2E-5 | 49 | 144 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006260 | Biological Process | DNA replication | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005664 | Cellular Component | nuclear origin of replication recognition complex | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 225 aa Download sequence Send to blast |
MDMEALGRKL GLAEKKTSIR KAEELRHLSN VHFDSSTFGV VAQDWPGLPT GVKFDPSEQQ 60 LLGHLAAKLG IGNARPHAFI NDFIKTMEED DGICYTHPEN LEGNTRKVYE NGEQIGCKKI 120 MVLNMALKGK KPLKTIWVMY QYHLGTEDNE KENEFVVSKI FYQQEKQCDK NNPGIPQEDA 180 GTSISKDDPL TPKTSTPPPP RSEKQHTCLD RIKEEHLFCA SLPQV |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor regulating the transcriptional activation response to gamma irradiation (PubMed:19549833). Required for stem-cell death induced by UVB or by gamma irradiation (PubMed:20634150). Not required for ATM activation, but participates in pathways governed by both ATM and ATR sensor kinases (PubMed:19549833). Involved in DNA damage response (DDR) system that regulates cell cycle arrest (PubMed:24399300). Functional homolog of animal p53 (PubMed:24736489). Regulates SMR5 and SMR7 transcription (PubMed:24399300). Regulates DNA repair and cytokinin signaling separately and plays a key role in controlling lateral root formation under genotoxic stress. {ECO:0000269|PubMed:19549833, ECO:0000269|PubMed:20634150, ECO:0000269|PubMed:24399300, ECO:0000305|PubMed:24736489}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Not induced by zeocin or ionizing radiation treatment. {ECO:0000269|PubMed:23907539}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EF676620 | 8e-43 | EF676620.1 Picea sitchensis clone WS02744_L04 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011627944.1 | 6e-56 | SUPPRESSOR OF GAMMA RESPONSE 1 isoform X4 | ||||
Refseq | XP_020531159.1 | 7e-56 | SUPPRESSOR OF GAMMA RESPONSE 1 isoform X5 | ||||
Swissprot | Q6NQK2 | 2e-41 | NAC8_ARATH; SUPPRESSOR OF GAMMA RESPONSE 1 | ||||
TrEMBL | B8LLI0 | 1e-74 | B8LLI0_PICSI; Uncharacterized protein | ||||
STRING | ERM95816 | 5e-56 | (Amborella trichopoda) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G25580.1 | 2e-40 | NAC family protein |