PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00040545-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family G2-like
Protein Properties Length: 674aa    MW: 74732.3 Da    PI: 7.7109
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00040545-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like31.34.7e-104664863555
           G2-like  35 lmkvkgLtlehvkSHLQkYRl 55 
                       lm+v+gLt+e+v+SHLQkYRl
  PSME_00040545-RA 466 LMNVQGLTRENVASHLQKYRL 486
                       8*******************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd147341.38E-16229291No hitNo description
Gene3DG3DSA:1.20.1020.101.6E-20330427IPR000197Zinc finger, TAZ-type
SuperFamilySSF579336.93E-18331428IPR000197Zinc finger, TAZ-type
SMARTSM005511.7E-32331424IPR000197Zinc finger, TAZ-type
PfamPF021351.2E-11339423IPR000197Zinc finger, TAZ-type
Gene3DG3DSA:1.10.10.602.4E-10465491IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003712Molecular Functiontranscription cofactor activity
GO:0004402Molecular Functionhistone acetyltransferase activity
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 674 aa     Download sequence    Send to blast
MNGATNYSSQ RSRPLCMDGV CLNPEGKHSA KMVASLNSNH SESSYPCDLK GARKNKFSSK  60
YDVKVEACGP IIDGQNFIQN GEHREISKFP IKSIESLRTD RDSRSSHDKG MPRSFDAAGR  120
NLELQHKFPS NKVPGYVEDK STDQSTQDTK LDRDSCPDGE NYAPPVEGGE TSLECKMRHS  180
FTPYVELAAL RYEQEDMKKY VFHLLVLSHV FSVPSLKLVC TQNSEHGLLT TDNVIDVLKM  240
EILCDALRLN LLCMHLIVKS FKTVAKSEGW KVMRQSNPKL EQEILEFVIE ADSVALSAFD  300
TDANLDVMYH PILNLIYYMR KQERLRKIEE KKIYLQLYDA MEALVHICRD GCRTIGPHDK  360
DLDENQGPCN FPACKGLESL VRHFAAYKTR VPGGCVHYKR MWQLLELHSR MCSEPDICKV  420
PLCRALSSLL GHEMRDTMRM QSCIIFSGRN RNKQNENRQE IIHAMLMNVQ GLTRENVASH  480
LQKYRLYLKR LSGVASQQGS MGNTFGGGRE SSFGSLCQVD GIGDLQVLAQ SGHLSTCALE  540
SLQAGVLGRL NGSVGLGFPG LNSSGMLQFA SLPGLGCNNS IGRAQGIAPV NNPMNAFPCL  600
STGLELDQLQ QKQQIARLGD IGAPVDDPAG FRTMQWHLTA TISSPVGLGG GSSGNILVHS  660
TNNALVLQLM QQQQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1125821e-163BT112582.1 Picea glauca clone GQ03317_O18 mRNA sequence.
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G16857.23e-22response regulator 1