PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00040434-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family NAC
Protein Properties Length: 312aa    MW: 35996 Da    PI: 7.4491
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00040434-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM139.71.8e-43221483128
               NAM   3 pGfrFhPtdeelvveyLkkkvegkk.leleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 
                       pGfrF Pt++elv +yLkk+++g + l+l+++i+++d+y+++Pw+Lp  + + +ek+w+fF++r++k++   r+nr t sgyWkatg+dk+v 
  PSME_00040434-RA  22 PGFRFYPTEQELVGFYLKKRAQGGHtLDLDKIIPTLDLYQYDPWQLPgLANDVGEKQWFFFVPRESKKPC-PRPNRLTVSGYWKATGSDKTVR 113
                       9********************99987888889***************555566999**********9985.8********************* PP

               NAM  94 skkgelvglkktLvfykgrapkgektdWvmheyrl 128
                       +++ + +glkk+Lvfykg+ap g++t+W+m+eyr+
  PSME_00040434-RA 114 NERLQCIGLKKILVFYKGKAPLGQRTEWIMNEYRM 148
                       *999*****************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.18E-4519169IPR003441NAC domain
PROSITE profilePS5100549.35820169IPR003441NAC domain
PfamPF023652.9E-2322148IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 312 aa     Download sequence    Send to blast
MAMKLEELHN DGKVQGDFKE YPGFRFYPTE QELVGFYLKK RAQGGHTLDL DKIIPTLDLY  60
QYDPWQLPGL ANDVGEKQWF FFVPRESKKP CPRPNRLTVS GYWKATGSDK TVRNERLQCI  120
GLKKILVFYK GKAPLGQRTE WIMNEYRMPD FRSSANKIKD VVLCRIYRKA VSQKSMEQGA  180
MPNYVEREEA EVVSRDEYKE KSHSITCSTV HGSFQISNPI TETEVSSLRY NENQKALCSS  240
ALGNTNEEEA SLFEFLEPIL FYEETMESKN QKAYKPAQLE LPKLSMDYLF SQPIASPYSL  300
LSSPSMFHIP SL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A2e-452217219168NO APICAL MERISTEM PROTEIN
1ut4_B2e-452217219168NO APICAL MERISTEM PROTEIN
1ut7_A2e-452217219168NO APICAL MERISTEM PROTEIN
1ut7_B2e-452217219168NO APICAL MERISTEM PROTEIN
4dul_A2e-452217219168NAC domain-containing protein 19
4dul_B2e-452217219168NAC domain-containing protein 19
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008791987.11e-56NAC domain-containing protein 22-like
TrEMBLA0A075M5N51e-136A0A075M5N5_9SPER; NAC domain protein
STRINGXP_008791987.14e-56(Phoenix dactylifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02450.17e-54NAC domain containing protein 35