PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00040234-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family ARR-B
Protein Properties Length: 285aa    MW: 32023.3 Da    PI: 5.4314
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00040234-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like78.77.1e-25233282151
           G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQ 51 
                       kpr++W+ eLH++Fv+ v+qL G++kA+Pk+ile+m+v+gLt+e+v+SHLQ
  PSME_00040234-RA 233 KPRVVWSVELHQQFVSSVNQL-GIDKAVPKRILEMMNVHGLTRENVASHLQ 282
                       79*******************.***************************** PP
2Response_reg83.56.4e-28481561109
                       EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHH CS
      Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealk 91 
                       vl+vdD+p+ ++++ ++l++  y ev+++++++ al +l+e++  +Dl++ D+ mp+mdG++ll++   e  +lp+i+++a g+ + + + +k
  PSME_00040234-RA  48 VLVVDDDPICLKIIDKMLRRCLY-EVTTCSHATVALSMLRERKgsFDLVISDVYMPDMDGFKLLEHVGLEM-DLPVIMMSADGDTSVVMKGIK 138
                       89*********************.***************999999**********************6644.8******************** PP

                       TTESEEEESS--HHHHHH CS
      Response_reg  92 aGakdflsKpfdpeelvk 109
                        Ga d+l Kp+ +eel +
  PSME_00040234-RA 139 HGACDYLLKPIRIEELKN 156
                       ***************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0363921.7E-14126283IPR017053Response regulator B-type, plant
Gene3DG3DSA:3.40.50.23005.2E-4545188No hitNo description
SuperFamilySSF521724.27E-3745168IPR011006CheY-like superfamily
SMARTSM004481.2E-3146158IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011043.51547162IPR001789Signal transduction response regulator, receiver domain
PfamPF000727.2E-2548156IPR001789Signal transduction response regulator, receiver domain
CDDcd001561.79E-2949162No hitNo description
PROSITE profilePS5129410.417230285IPR017930Myb domain
SuperFamilySSF466894.48E-15231282IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.608.8E-24232282IPR009057Homeodomain-like
TIGRFAMsTIGR015572.1E-21233283IPR006447Myb domain, plants
PfamPF002492.1E-5235282IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 285 aa     Download sequence    Send to blast
MATVQSLQHS SISTASSLPS DSLGVFDENS GFNEQSRFPN QFPAGLRVLV VDDDPICLKI  60
IDKMLRRCLY EVTTCSHATV ALSMLRERKG SFDLVISDVY MPDMDGFKLL EHVGLEMDLP  120
VIMMSADGDT SVVMKGIKHG ACDYLLKPIR IEELKNIWQH VIRKKRNSGR ELEHSGSAED  180
SEKNKKGSED IEYASSVNEG TESNSKTSKR RKETKEEDDD FEQENDDPTS LKKPRVVWSV  240
ELHQQFVSSV NQLGIDKAVP KRILEMMNVH GLTRENVASH LQVAI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A2e-17229282154ARR10-B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250|UniProtKB:Q940D0}.
UniProtTranscriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250|UniProtKB:Q940D0}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006849799.11e-140two-component response regulator ORR21 isoform X1
RefseqXP_011625385.11e-140two-component response regulator ORR21 isoform X2
SwissprotA2XE311e-108ORR21_ORYSI; Two-component response regulator ORR21
SwissprotQ8H7S71e-108ORR21_ORYSJ; Two-component response regulator ORR21
TrEMBLW1PVR01e-139W1PVR0_AMBTC; Uncharacterized protein
STRINGERN113801e-139(Amborella trichopoda)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16110.11e-101response regulator 2
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]