PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PSME_00040152-RA

Organism

Pseudotsuga menziesii

Taxonomic ID

3357

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga

Family

GATA

Protein Properties

Length: 149aa MW: 16575.7 Da PI: 10.7071

Description

GATA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PSME_00040152-RA	genome	PRS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GATA	35.4	1.5e-11	27	61	1	35
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 C+ C+t TplWR+gpdg+k+L n+ G+ ++k g+ PSME_00040152-RA 27 CAECKTNRTPLWRNGPDGPKSLYNSYGIQFKKIGK 61 *******************************9886 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50114	9.209	21	44	IPR000679	Zinc finger, GATA-type
SMART	SM00401	1.6E-7	21	73	IPR000679	Zinc finger, GATA-type
SuperFamily	SSF57716	2.28E-6	21	69	No hit	No description
Gene3D	G3DSA:3.30.50.10	1.3E-9	23	63	IPR013088	Zinc finger, NHR/GATA-type
Pfam	PF00320	1.0E-9	27	61	IPR000679	Zinc finger, GATA-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0008270	Molecular Function	zinc ion binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 149 aa Download sequence Send to blast
MSIGENRLVK TGAMDAEFLD AAVARTCAEC KTNRTPLWRN GPDGPKSLYN SYGIQFKKIG 60 KREQQKAGSR LPSVSSVRQM TAKRKQQDSD EYDPLPRDAA IAGTSHPLRK KSTATVTAAP 120 TGGRHRDRRW SSEESSLNER QFKRAPVVE

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT102848	2e-94	BT102848.1 Picea glauca clone GQ0201_J20 mRNA sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A0C9QY08	3e-19	A0A0C9QY08_9SPER; TSA: Wollemia nobilis Ref_Wollemi_Transcript_23_1742 transcribed RNA sequence

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G50870.1	3e-13	GATA family protein