PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PSME_00040054-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
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Family | MYB | ||||||||
Protein Properties | Length: 400aa MW: 45283.9 Da PI: 6.3186 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 54.8 | 2.2e-17 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg W++eEde+l++ v+ +G g+W+ +++ g+ R++k+c++rw +yl PSME_00040054-RA 14 RGLWSPEEDEKLIKHVTAYGHGCWSVVPKQAGLQRCGKSCRLRWINYL 61 788*******************************************97 PP | |||||||
2 | Myb_DNA-binding | 48.1 | 2.7e-15 | 67 | 110 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg+++ +E+ l++d+++ G++ W+ Ia++++ gRt++++k++w++ PSME_00040054-RA 67 RGSFSLQEERLIIDLHRIIGNR-WAQIAKHLP-GRTDNEVKNFWNS 110 899*******************.*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 3.9E-27 | 6 | 64 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 18.18 | 9 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 4.87E-29 | 11 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.7E-13 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 5.3E-15 | 14 | 61 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.10E-11 | 17 | 61 | No hit | No description |
PROSITE profile | PS51294 | 24.698 | 62 | 116 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 9.5E-25 | 65 | 117 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 5.5E-15 | 66 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 6.9E-14 | 67 | 110 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 9.69E-11 | 69 | 109 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 400 aa Download sequence Send to blast |
MGHHSCCNKQ KVKRGLWSPE EDEKLIKHVT AYGHGCWSVV PKQAGLQRCG KSCRLRWINY 60 LRPDLKRGSF SLQEERLIID LHRIIGNRWA QIAKHLPGRT DNEVKNFWNS CIKKKLIAQG 120 IDLKAHKLLN QAASSQELQE EKSASLIDQG FAVSETRDGL KRVADIRDFV PGNYIDSLLC 180 AGNTDISPYY AIHGGSWMER PSYINCSKPD HEEILYEPNF VNDFRHVISQ RFPALNDYQI 240 SLSQNSEFEN KLLQQPEIIS DPTTFSPEMK CFNRQKHPFS GHDNNPIELG QFDMAAMSNY 300 QGTDQQLDTF VMIPSAGCLS HSSDSGFNPS CDMRRMDLPK LREIETAEPE CTSNQVEANG 360 TRFSSSINGS YGNYGIELLD SAITIAMDSE CINPVTEWNS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 4e-31 | 14 | 116 | 7 | 108 | B-MYB |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A222UAQ5 | 1e-123 | A0A222UAQ5_GINBI; R2R3MYB28 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G13890.2 | 7e-74 | myb domain protein 26 |