PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00040036-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family MYB
Protein Properties Length: 483aa    MW: 52791.6 Da    PI: 4.7154
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00040036-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding513.3e-162976148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                      +g+WT+ Ed +lv +vk+ G g+W+++ +  g+ R++k+c++rw ++l
  PSME_00040036-RA 29 KGPWTAAEDAILVAYVKENGEGNWNSVQKQSGLSRCGKSCRLRWANHL 76
                      79******************************************9986 PP
2Myb_DNA-binding491.5e-1582125146
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                       +g++T +E+  ++d++++lG++ W++ a+ m+ gRt++++k++w++
  PSME_00040036-RA  82 KGAFTLDEERMIIDLHAKLGNK-WARMAALMP-GRTDNEIKNYWNT 125
                       799*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.4542476IPR017930Myb domain
SuperFamilySSF466891.41E-2927123IPR009057Homeodomain-like
SMARTSM007176.0E-142878IPR001005SANT/Myb domain
PfamPF002494.9E-142976IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.2E-223083IPR009057Homeodomain-like
CDDcd001673.30E-103176No hitNo description
PROSITE profilePS5129423.76877131IPR017930Myb domain
SMARTSM007171.0E-1481129IPR001005SANT/Myb domain
PfamPF002497.2E-1482125IPR001005SANT/Myb domain
CDDcd001671.02E-1084125No hitNo description
Gene3DG3DSA:1.10.10.601.9E-2484131IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009860Biological Processpollen tube growth
GO:0005634Cellular Componentnucleus
GO:0090406Cellular Componentpollen tube
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 483 aa     Download sequence    Send to blast
MDERWVEMKK GREIEEGTSL FTGEVALKKG PWTAAEDAIL VAYVKENGEG NWNSVQKQSG  60
LSRCGKSCRL RWANHLRPNL KKGAFTLDEE RMIIDLHAKL GNKWARMAAL MPGRTDNEIK  120
NYWNTRIKRR MRAGLSLYPP EVGAQDQGQG LDSITSTHSV HKPEEHGVFM GFGGGSCLTG  180
LSEMILDNIK SGGSTDVCID QDDGGLSLML KRTNDVSRAG SFDKLSDESG ISIGMQGFLL  240
QSNPNTMVSL NNNNSSNSLY SVFGASGPKL ELPSSQSAGS AASADTPKSN LSFTNFSSSS  300
SSFQQPNCLI SEADSFNDNN SGLLEALLMQ ESQSHTNKYV VNSEGHRVEK EAKPNSQVID  360
LQELGDTQVH GDIQGADEEI LSLLDFAKPD PLILPEWYST SPLSSGIYNP NEGSSVPLSS  420
AFDSHECELM IVDLDYSTCN NNNNQYLWDL MGSCAWNSMP GAYQLSDLQA NFEHSRNPMN  480
GGR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-29271315108B-MYB
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A222UAE01e-124A0A222UAE0_GINBI; R2R3MYB37
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G55020.12e-67myb domain protein 120