PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PSME_00039845-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
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Family | MYB | ||||||||
Protein Properties | Length: 246aa MW: 27558.3 Da PI: 8.1644 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 51 | 3.4e-16 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.TTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg.kgRtlkqcksrwqkyl 48 +g+WT+eEd++l++ ++ +G g+W++ +r g + R++k+c++rw +yl PSME_00039845-RA 14 KGAWTKEEDDRLIQHIQIHGEGCWRSLPRAAGiL-RCGKSCRLRWINYL 61 79******************************55.************97 PP | |||||||
2 | Myb_DNA-binding | 53.9 | 4.1e-17 | 67 | 112 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg ++++Ed+l+++++++lG++ W++Ia +++ gRt++++k++w+++l PSME_00039845-RA 67 RGHFSEDEDDLILKLHALLGNK-WSLIAGRLP-GRTDNEIKNYWNSHL 112 799*******************.*********.************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 4.7E-23 | 5 | 64 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 16.918 | 9 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 3.63E-29 | 11 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.7E-13 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 5.0E-15 | 14 | 61 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 5.34E-11 | 16 | 61 | No hit | No description |
PROSITE profile | PS51294 | 27.768 | 62 | 116 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.5E-27 | 65 | 117 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.7E-16 | 66 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 5.8E-16 | 67 | 112 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 5.54E-12 | 70 | 112 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 246 aa Download sequence Send to blast |
MGRAPCCANA DRNKGAWTKE EDDRLIQHIQ IHGEGCWRSL PRAAGILRCG KSCRLRWINY 60 LRPDLKRGHF SEDEDDLILK LHALLGNKWS LIAGRLPGRT DNEIKNYWNS HLKKKLISMG 120 VDPLTHRPFQ RKSGHGHDRS LSGNVREPIS REIVEDFFHC PSELSGDSEQ VSDAASGSVT 180 RNEPASINLN LNLELSITCP NSILAAAKEE TIILKSKAGE GDLIDDQKGY LCRYGECPPG 240 TRLLLR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 2e-29 | 9 | 116 | 22 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription repressor involved in regulation of protection against UV. Mediates transcriptional repression of CYP73A5, the gene encoding trans-cinnamate 4-monooxygenase, thereby regulating the accumulation of the UV-protectant compound sinapoylmalate. {ECO:0000269|PubMed:11080161}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Down-regulated by exposure to UV-B light. {ECO:0000269|PubMed:11080161}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016693253.1 | 2e-81 | PREDICTED: transcription repressor MYB4-like | ||||
Swissprot | Q9SZP1 | 2e-79 | MYB4_ARATH; Transcription repressor MYB4 | ||||
TrEMBL | A9NXX6 | 1e-137 | A9NXX6_PICSI; Uncharacterized protein | ||||
STRING | Gorai.005G162600.1 | 8e-80 | (Gossypium raimondii) | ||||
STRING | XP_010431803.1 | 1e-79 | (Camelina sativa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G38620.1 | 2e-79 | myb domain protein 4 |