PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00039795-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family GATA
Protein Properties Length: 282aa    MW: 31158.6 Da    PI: 6.4343
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00039795-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA49.27.4e-16202238135
              GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 
                       C +Cgt +  Tp++Rrgp g++tLCnaCGl ++ kg+
  PSME_00039795-RA 202 CLHCGTGErsTPMMRRGPVGPRTLCNACGLVWANKGV 238
                       99****9999************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009795.9E-105994IPR010399Tify domain
PROSITE profilePS5132014.435994IPR010399Tify domain
PfamPF062003.0E-126193IPR010399Tify domain
PROSITE profilePS5101713.106127169IPR010402CCT domain
PfamPF062032.3E-16127168IPR010402CCT domain
PROSITE profilePS501149.302196252IPR000679Zinc finger, GATA-type
SMARTSM004013.2E-12196249IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.19E-12198253No hitNo description
Gene3DG3DSA:3.30.50.102.5E-15201243IPR013088Zinc finger, NHR/GATA-type
CDDcd002023.47E-14201244No hitNo description
PfamPF003201.9E-13202238IPR000679Zinc finger, GATA-type
PROSITE patternPS003440202229IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 282 aa     Download sequence    Send to blast
MQIHYMHSDE HGHPLHHSND NGAGEEQDEG DGDNNCIEEA DVQSDGDNLG EPQSVAPVRS  60
QGTNQLTLSY QGEVYVFDMV APEKVQQVLL LLGGREIPNS MVGMPIASIH HQKGLSDVSH  120
RLNQPQRLAS LTRFREKRKE RCFDKKIRYT VRKEVAQRMQ RNKGQFTSYK ADSKDLVPAG  180
QKWDSSEGWT PNTNGTQQEA VCLHCGTGER STPMMRRGPV GPRTLCNACG LVWANKGVLR  240
DLSKNSTSLG SQEQSQSSHE QVLVGLLKND GGPGSQETEL GE
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250, ECO:0000269|PubMed:14966217}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00198DAPTransfer from AT1G51600Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1238030.0BT123803.1 Picea sitchensis clone WS04717_I13 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010276694.11e-102PREDICTED: GATA transcription factor 28 isoform X1
SwissprotQ8H1G03e-79GAT28_ARATH; GATA transcription factor 28
TrEMBLD5AC320.0D5AC32_PICSI; Uncharacterized protein
STRINGXP_010276694.11e-102(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21175.22e-78ZIM-like 1