 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
PSME_00039668-RA |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
|
| Family |
MYB_related |
| Protein Properties |
Length: 180aa MW: 20865.4 Da PI: 7.0986 |
| Description |
MYB_related family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| PSME_00039668-RA | genome | PRS | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Myb_DNA-binding | 32.7 | 1.8e-10 | 101 | 141 | 3 | 45 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45
rW++ E e++++a +q+G++ + I + ++ gRt+ q+k ++
PSME_00039668-RA 101 RWSKSETERFYKAMQQFGTD-FGMIQHLFP-GRTRRQVKAKFK 141
9*******************.*********.********9985 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 180 aa
Download sequence Send
to blast |
MENKQQATNR KSCLSETALN SNANEPGKES QEDEGNEIPC CRVVLAPQVQ VINGQIVINE 60
ESLVVSHREL NVDDTQTYRR VEETSSKLNY HTYMNRAPVE RWSKSETERF YKAMQQFGTD 120
FGMIQHLFPG RTRRQVKAKF KMEERKHPLQ LADALIHRPQ GGHLLSLTSD CVYDWYNVFC
|
| 3D Structure ? help Back to Top |
 |
| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 6cnb_S | 1e-14 | 53 | 155 | 369 | 473 | Transcription factor TFIIIB component B'',Transcription factor TFIIIB component B'',Transcription factor TFIIIB component B'',Transcription factor TFIIIB component B'',Transcription factor TFIIIB component B'' |
| 6cnc_S | 1e-14 | 53 | 155 | 369 | 473 | Transcription factor TFIIIB component B'',Transcription factor TFIIIB component B'',Transcription factor TFIIIB component B'',Transcription factor TFIIIB component B'',Transcription factor TFIIIB component B'' |
| 6cnd_S | 1e-14 | 53 | 155 | 369 | 473 | Transcription factor TFIIIB component B'',Transcription factor TFIIIB component B'',Transcription factor TFIIIB component B'',Transcription factor TFIIIB component B'',Transcription factor TFIIIB component B'' |
| 6cnf_S | 1e-14 | 53 | 155 | 369 | 473 | Transcription factor TFIIIB component B'',Transcription factor TFIIIB component B'',Transcription factor TFIIIB component B'',Transcription factor TFIIIB component B'',Transcription factor TFIIIB component B'' |
| Search in ModeBase |
