PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PSME_00039526-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
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Family | BES1 | ||||||||
Protein Properties | Length: 414aa MW: 43294.9 Da PI: 8.229 | ||||||||
Description | BES1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF822 | 198.9 | 1.7e-61 | 2 | 132 | 2 | 124 |
DUF822 2 gsgrkptwkErEnnkrRERrRRaiaakiyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyrkgskpleeaeaagssasaspessl 94 ++ r ptwkErEnnkrRERrRRaiaakiy+GLR++Gnyklpk++DnneVlkALc+eAGw ve+DGttyrkg+ p+e++e++g+sas+sp+ss+ PSME_00039526-RA 2 TGSRLPTWKERENNKRRERRRRAIAAKIYSGLRMYGNYKLPKHCDNNEVLKALCNEAGWQVEEDGTTYRKGCPPPERMETGGASASMSPSSSY 94 57899**********************************************************************************999999 PP DUF822 95 q.s.......slkssalaspvesysaspksssfpspss 124 + s s+ ss+++sp +sy+asp+sssfpsp PSME_00039526-RA 95 HpSpaasyhaSPASSSFPSPGPSYQASPASSSFPSPGP 132 82111111112334445555555555555555555543 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF05687 | 3.6E-59 | 3 | 147 | IPR008540 | BES1/BZR1 plant transcription factor, N-terminal |
Sequence ? help Back to Top |
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Protein Sequence Length: 414 aa Download sequence Send to blast |
MTGSRLPTWK ERENNKRRER RRRAIAAKIY SGLRMYGNYK LPKHCDNNEV LKALCNEAGW 60 QVEEDGTTYR KGCPPPERME TGGASASMSP SSSYHPSPAA SYHASPASSS FPSPGPSYQA 120 SPASSSFPSP GPSYQDGGYL IPWLKNLGGG GGGGGGVGTV SSGRGLPPIG TSNSAPVTPP 180 LSSPTARGPR AMPDWEALVK MSAAAAAANE NGNHCSGTGG AAVVADDPAA AFCNAVSGWS 240 TQQHHHHHYP FLSAPPSPAP HSHSRREPLD LSNATVDNTK GRWLGGVRVS ASASASMGPS 300 SPTFSLLSPA AQLEHSLGGE RSHFFAPADS RLWTPVGSAM SSPCRTPATG GAVVRVAAAD 360 EFQFECGSVK PWQGERIHEE CSGDMDIASD DLELTLGNSK RRAKAESVAT PMFS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5zd4_A | 1e-22 | 5 | 75 | 372 | 442 | Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1 |
5zd4_B | 1e-22 | 5 | 75 | 372 | 442 | Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1 |
5zd4_C | 1e-22 | 5 | 75 | 372 | 442 | Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1 |
5zd4_D | 1e-22 | 5 | 75 | 372 | 442 | Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT102963 | 0.0 | BT102963.1 Picea glauca clone GQ0204_C10 mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A3G6JA11 | 0.0 | A0A3G6JA11_PINTA; BES1/BZR1 homolog protein 4 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G78700.1 | 1e-33 | BES1/BZR1 homolog 4 |