PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PSME_00039482-RA

Organism

Pseudotsuga menziesii

Taxonomic ID

3357

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga

Family

G2-like

Protein Properties

Length: 376aa MW: 42628.6 Da PI: 5.6641

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PSME_00039482-RA	genome	PRS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	64.4	2.1e-20	304	356	2	55
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 r++Wt +LH+rF++ave+L ++ +P++ilelmk++gLt+++v+SHLQ R+ PSME_00039482-RA 304 FRVEWTMDLHRRFLQAVEKL-RVDQEIPSRILELMKLDGLTRHNVASHLQVTRM 356 69****************.9**************************9886 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.40.50.2300	7.3E-5	21	84	No hit	No description
PROSITE profile	PS51294	9.195	300	359	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	8.7E-20	301	358	IPR009057	Homeodomain-like
SuperFamily	SSF46689	8.78E-13	301	357	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.8E-20	303	356	IPR006447	Myb domain, plants

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 376 aa Download sequence Send to blast
MKISNFSNET EALDVVSNET NSFHVAWVEL GASEFLQKPI SEDKLKNIWQ HVVHKEFSEY 60 GTVVSEYLKP IKATILFMLH LGPELANVKS AQNIDSSDGS KTEASALHEQ DMSIEPYNSE 120 KFPAPSTPQL EQGGRSPSEE DKALILDDTT YFKAGTTHDD NNYEYETIRK LRLDAEVTSA 180 WSSQVDSPAS VKKETQDMYR LSLKTRNSSQ CGLKFVDIKS NQLGNEIAFR VTSLHSIFET 240 IDVQVVNAPS SKSDDENIEK EGILSSYACN EENVDSNTED MKGKKNNTEH DCKNSNIASS 300 KKKFRVEWTM DLHRRFLQAV EKLRVDQEIP SRILELMKLD GLTRHNVASH LQVTRMEEEK 360 KSTNRKKAEK WSGKKA

Sequence ? help Back to Top

Protein Sequence Length: 376 aa Download sequence Send to blast

MKISNFSNET EALDVVSNET NSFHVAWVEL GASEFLQKPI SEDKLKNIWQ HVVHKEFSEY  60
GTVVSEYLKP IKATILFMLH LGPELANVKS AQNIDSSDGS KTEASALHEQ DMSIEPYNSE  120
KFPAPSTPQL EQGGRSPSEE DKALILDDTT YFKAGTTHDD NNYEYETIRK LRLDAEVTSA  180
WSSQVDSPAS VKKETQDMYR LSLKTRNSSQ CGLKFVDIKS NQLGNEIAFR VTSLHSIFET  240
IDVQVVNAPS SKSDDENIEK EGILSSYACN EENVDSNTED MKGKKNNTEH DCKNSNIASS  300
KKKFRVEWTM DLHRRFLQAV EKLRVDQEIP SRILELMKLD GLTRHNVASH LQVTRMEEEK  360
KSTNRKKAEK WSGKKA

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. {ECO:0000250}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT107884	3e-43	BT107884.1 Picea glauca clone GQ03113_O04 mRNA sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Swissprot	Q6LA43	3e-20	APRR2_ARATH; Two-component response regulator-like APRR2

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G18020.6	1e-22	ARR-B family protein

Publications ? help Back to Top
Gong L, et al. Transcriptome Profiling of the Potato (Solanum tuberosum L.) Plant under Drought Stress and Water-Stimulus Conditions. PLoS ONE, 2015. 10(5): p. e0128041 [PMID:26010543]