PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PSME_00039462-RA

Organism

Pseudotsuga menziesii

Taxonomic ID

3357

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga

Family

NAC

Protein Properties

Length: 363aa MW: 41101.7 Da PI: 6.1876

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PSME_00039462-RA	genome	PRS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	162	2.2e-50	50	178	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 lppGfrFhPtdeelv +yLkk +++++l++ ++i+e+d+yk++Pw+Lp k++ +e+ewyfFs+rd+ky++g r++ra++sgyWkatg++k++l PSME_00039462-RA 50 LPPGFRFHPTDEELVIHYLKK-ASSTPLPV-TIIAEIDLYKFDPWELPGKATFGEQEWYFFSPRDRKYPNGARPKRAATSGYWKATGTNKPIL 140 79***************75.66778888.78***********8888999********************************** PP NAM 94 sk...kgelvglkktLvfykgrapkgektdWvmheyrl 128 ++ ++++vg+kk Lvfy gr pkg kt+W+mhey+l PSME_00039462-RA 141 TStsgGTQKVGVKKALVFYGGRPPKGIKTNWIMHEYHL 178 998888899**************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.57E-59	44	208	IPR003441	NAC domain
PROSITE profile	PS51005	59.027	50	208	IPR003441	NAC domain
Pfam	PF02365	2.4E-26	51	178	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 363 aa Download sequence Send to blast
MGPTIYNEYN TLLHNHEHLS EFGQFDFFCS NCELMESPAS FSGSHQQPQL PPGFRFHPTD 60 EELVIHYLKK ASSTPLPVTI IAEIDLYKFD PWELPGKATF GEQEWYFFSP RDRKYPNGAR 120 PKRAATSGYW KATGTNKPIL TSTSGGTQKV GVKKALVFYG GRPPKGIKTN WIMHEYHLAD 180 SGARPCSFPN KKGSLRLDDW VLCLIYKKNG HSQRVQGVER DESLSVDETD DPFIEGLLND 240 EAMDGNGNII HSSDLSHNNF SNSNDNNSDC QFEVVTKQEA LAVDNENKFN SLKRTLSLAA 300 FGDEEIHSAK RFNDIYNVNN NVSALLNSMQ PNQTFQQQNF LSALSDSQQN FRLPYIQNMH 360 WSS

Sequence ? help Back to Top

Protein Sequence Length: 363 aa Download sequence Send to blast

MGPTIYNEYN TLLHNHEHLS EFGQFDFFCS NCELMESPAS FSGSHQQPQL PPGFRFHPTD  60
EELVIHYLKK ASSTPLPVTI IAEIDLYKFD PWELPGKATF GEQEWYFFSP RDRKYPNGAR  120
PKRAATSGYW KATGTNKPIL TSTSGGTQKV GVKKALVFYG GRPPKGIKTN WIMHEYHLAD  180
SGARPCSFPN KKGSLRLDDW VLCLIYKKNG HSQRVQGVER DESLSVDETD DPFIEGLLND  240
EAMDGNGNII HSSDLSHNNF SNSNDNNSDC QFEVVTKQEA LAVDNENKFN SLKRTLSLAA  300
FGDEEIHSAK RFNDIYNVNN NVSALLNSMQ PNQTFQQQNF LSALSDSQQN FRLPYIQNMH  360
WSS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3swm_A	4e-70	47	214	17	174	NAC domain-containing protein 19
3swm_B	4e-70	47	214	17	174	NAC domain-containing protein 19
3swm_C	4e-70	47	214	17	174	NAC domain-containing protein 19
3swm_D	4e-70	47	214	17	174	NAC domain-containing protein 19
3swp_A	4e-70	47	214	17	174	NAC domain-containing protein 19
3swp_B	4e-70	47	214	17	174	NAC domain-containing protein 19
3swp_C	4e-70	47	214	17	174	NAC domain-containing protein 19
3swp_D	4e-70	47	214	17	174	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor of the NAC family associated with the grain protein content (GPC). Accelerates senescence and increases nutrient remobilization from leaves to developing grains. Sequences of 11 European varieties of H.vulgare tested belongs to the same haplotype while the sequence found in H.spontaneum, an ancestor of the cultivated H.vulgare which has a higher GPC, belongs to an other haplotype. {ECO:0000269\|PubMed:17124321}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT111167	1e-79	BT111167.1 Picea glauca clone GQ03233_M04 mRNA sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006841705.1	1e-106	NAC transcription factor 56
Refseq	XP_027930033.1	1e-106	NAC transcription factor 56-like
Swissprot	A0SPJ9	4e-88	NAM2_HORVV; NAC transcription factor NAM-2
TrEMBL	A0A2G5CE11	1e-106	A0A2G5CE11_AQUCA; Uncharacterized protein
STRING	Aquca_059_00027.1	1e-107	(Aquilegia coerulea)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G61110.1	4e-89	NAC domain containing protein 25

Publications ? help Back to Top
Uauy C,Distelfeld A,Fahima T,Blechl A,Dubcovsky J A NAC Gene regulating senescence improves grain protein, zinc, and iron content in wheat. Science, 2006. 314(5803): p. 1298-301 [PMID:17124321]