PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00039448-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family LBD
Protein Properties Length: 267aa    MW: 30061.8 Da    PI: 5.859
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00039448-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26051.92.2e-16449747100
            DUF260  47 kalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallkee 100
                       ++lp e+r+da+ss+vyeA+ r rdPv+G+vgvi++lq+++++l+++la++++e
  PSME_00039448-RA  44 SDLPAEQRKDAVSSMVYEARQRFRDPVHGCVGVISDLQKKVAELQSQLASTQTE 97 
                       67899********************************************99987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508919.561198IPR004883Lateral organ boundaries, LOB
PfamPF031951.2E-144495IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 267 aa     Download sequence    Send to blast
MRNERSHISV CRLQDPEKEM FIEMRARALF SPKQSSQIPL GTQSDLPAEQ RKDAVSSMVY  60
EARQRFRDPV HGCVGVISDL QKKVAELQSQ LASTQTELAN ISVQHANLLT LITGYHEVSD  120
PKLYSASPQE SGDTDMNERS HIFVCRLQDP EKEMFREMRA RALFSPKQSS EIPVGTQSVR  180
KWPCHQTTTG VISDLQKKVA ELQSQLASTQ TELANISVQH ANLLTLITGY HEVSDPKLYS  240
ASPQESGDTY MSSPDADPLP LWEQFWT
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF6781427e-56EF678142.1 Picea sitchensis clone WS02823_H17 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLB8LQI92e-35B8LQI9_PICSI; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07900.14e-22LOB domain-containing protein 1