PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00039378-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family G2-like
Protein Properties Length: 589aa    MW: 65156.6 Da    PI: 7.3173
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00039378-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like100.11.4e-31362415255
           G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                       pr+rWt++LH++Fv+ave LGG+e+AtPk++lelm+vk+Ltl+hvkSHLQ+YR+
  PSME_00039378-RA 362 PRMRWTSTLHAHFVHAVELLGGHERATPKSVLELMNVKDLTLAHVKSHLQMYRT 415
                       9****************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466894.12E-15359415IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.606.8E-28360415IPR009057Homeodomain-like
TIGRFAMsTIGR015572.9E-23362415IPR006447Myb domain, plants
PfamPF002491.3E-6363414IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009944Biological Processpolarity specification of adaxial/abaxial axis
GO:0010158Biological Processabaxial cell fate specification
GO:0010229Biological Processinflorescence development
GO:0048481Biological Processplant ovule development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 589 aa     Download sequence    Send to blast
VAVVLSYSST RLLPPSVFLL WLRISDSLSW CDVRGVEDLE ISSGSGQTTM QPQEGFYIGD  60
VPDLSLHISP PNSKPASTSS STEHDIGFDL WRRALKSNGN LSEGSSNSSG ASERRGAGDI  120
DLCLAHPANH HHSNSNNYGS VDCSQESRRH EEGNQRLQST LALLELQPND RISSPIKGVP  180
VYHNRSQSFP FLQPTVEARR HASPAYRGHE NGSFHENPTL GSGIYGSQVE SSSSLHQSLA  240
GQAILPSRGY NRSNDLARDQ RGIDAMRFGL PELNNPNMML NASHHHQQRH NPYPYSRSEL  300
KLGTHEDIME SQGSVGINVD HQRRGSFEAG ASRAPSSLSD SQSSLRSRFM SKLPSKRSMR  360
APRMRWTSTL HAHFVHAVEL LGGHERATPK SVLELMNVKD LTLAHVKSHL QMYRTVKTTD  420
KPAASSGQSE TFETSSGETP EEFITEKPQF NNSGNEALKY GRIVNGRDSM LSVQSKSPFQ  480
QDDYSNLWSN SSSKGSWSTR DQLQGLHLST VDQSNLHISA DDQSNLHRSF ALRQNSANLL  540
EVNGNRQQQS TLQHRMSTDA IHHSSSESSH PHFNSSTLSQ SEANIRMLD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A5e-16363417458Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B5e-16363417458Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A4e-16363417357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B4e-16363417357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C4e-16363417357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D4e-16363417357Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A5e-16363417458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C5e-16363417458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D5e-16363417458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F5e-16363417458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H5e-16363417458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J5e-16363417458Protein PHOSPHATE STARVATION RESPONSE 1
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00174DAPTransfer from AT1G32240Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1115120.0BT111512.1 Picea glauca clone GQ03238_L24 mRNA sequence.
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32240.16e-43G2-like family protein