PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00039353-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family MYB
Protein Properties Length: 420aa    MW: 46524.9 Da    PI: 6.5088
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00039353-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding48.81.7e-151057148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                      rg+WT +Ed++l+++++ +G g W+t + + g+ R++k+c++rw +yl
  PSME_00039353-RA 10 RGPWTRDEDLRLKNYIEAHGEGGWRTLPVKAGLLRCGKSCRLRWMNYL 57
                      89******************************99************97 PP
2Myb_DNA-binding476.1e-1568108648
                       HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding   6 teEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                       +eE++l+++++++lG++ W++Ia +++ gRt++++k++w+++l
  PSME_00039353-RA  68 PEEEDLILRLHRLLGNR-WALIAGRIP-GRTDNEIKNYWNTHL 108
                       7****************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.172557IPR017930Myb domain
SuperFamilySSF466891.64E-277104IPR009057Homeodomain-like
SMARTSM007171.3E-10959IPR001005SANT/Myb domain
PfamPF002497.7E-131057IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.9E-181164IPR009057Homeodomain-like
CDDcd001672.61E-81257No hitNo description
PROSITE profilePS5129423.09858112IPR017930Myb domain
SMARTSM007179.0E-1462110IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.9E-2365113IPR009057Homeodomain-like
PfamPF002497.6E-1468108IPR001005SANT/Myb domain
CDDcd001676.41E-1268108No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 420 aa     Download sequence    Send to blast
MGRTPPGLNR GPWTRDEDLR LKNYIEAHGE GGWRTLPVKA GLLRCGKSCR LRWMNYLRPD  60
VKCGHILPEE EDLILRLHRL LGNRWALIAG RIPGRTDNEI KNYWNTHLSK KLISQGIDPR  120
THKHLSESHD EGLKPGDRGT NQKSQQENNT ATLPARNIAD RRDDLQAVPS KGGAIVADGN  180
NDNREVTTAP ASNVNQISET SPTCNSQPAS VAINESLQTS AISSTPSPFL ESTFNNNINM  240
VSGQIPYPSL RPTCFDSLAL RENVGRYDLD QYLMENPVTT SNDMITSTLR LSSGLHAAQF  300
EPNHSFISGN DALLYNEKHQ TSIQPADIPA SSAAPHDKVI AMSYPYYIPP TSMAAAALGD  360
FNSDNFQVLL QSFVNEDLQA LQEPGRHTSH EQNLQLCPFS QPEAANLTHN FWSMLSPSSQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A6e-2661123108B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF6774421e-127EF677442.1 Picea sitchensis clone WS02768_O13 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLB8LNN41e-111B8LNN4_PICSI; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13540.12e-62myb domain protein 5