PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00039352-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family MYB
Protein Properties Length: 481aa    MW: 53222.5 Da    PI: 5.5553
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00039352-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.62.2e-162774148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                      rg+WT eEd +l ++v+ +G g W+t +++ g+ R++k+c++rw +yl
  PSME_00039352-RA 27 RGPWTLEEDFRLTNYVEAHGEGGWTTLPKKAGLLRCGKSCRLRWMNYL 74
                      89******************************99************97 PP
2Myb_DNA-binding48.32.4e-1586125748
                       HHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding   7 eEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                       eE++l+++++++lG++ W++Ia +m+ gRt++++k++w+++l
  PSME_00039352-RA  86 EEEDLILRLHRLLGNR-WSLIAGRMP-GRTDNEIKNYWNTHL 125
                       9***************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.606.6E-201876IPR009057Homeodomain-like
PROSITE profilePS5129413.322274IPR017930Myb domain
SuperFamilySSF466891.99E-2824121IPR009057Homeodomain-like
SMARTSM007172.8E-112676IPR001005SANT/Myb domain
PfamPF002499.0E-142774IPR001005SANT/Myb domain
CDDcd001678.98E-92974No hitNo description
PROSITE profilePS5129424.78275129IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.6E-2377129IPR009057Homeodomain-like
SMARTSM007173.6E-1479127IPR001005SANT/Myb domain
CDDcd001676.74E-1286125No hitNo description
PfamPF002499.7E-1486125IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 481 aa     Download sequence    Send to blast
MNIGILNSAS SDSMGRSPCS LNAGLNRGPW TLEEDFRLTN YVEAHGEGGW TTLPKKAGLL  60
RCGKSCRLRW MNYLRPDVKR GHILLEEEDL ILRLHRLLGN RWSLIAGRMP GRTDNEIKNY  120
WNTHLSKKLL SQGIDPRTHK PLPESQDVMC SSPVDSETRQ KSKQDQKMTT LPGNYIQESR  180
ADVQDEASNG ETIAADHGNE DQAAATSLPA NKANNEFREP SLISNCQPVS VLINISPQSP  240
LISSTAFQES SSTCVPEAVS NPVDMNHDKG SKQISFPLNS TACFSRSEQL PGVDRYDLDQ  300
YLMNKPVMSS NDMIAASTVR LSSASQSAPL VGQFDSNHDF ISRNALLNEK HHMSQLQSLQ  360
TLEINPQHSF TVYPCEEATY NKLSHTSCAV PDRITASCSY PYPSVPTAMG AALVDFNSDI  420
FPSLLDSFGS EELQLEEPDA QTSVAQNVQL IPSIQPKAES LASYDLWSML SPIPQYHHHY  480
G
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C5e-272112921128MYB TRANSFORMING PROTEIN
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1171391e-133BT117139.1 Picea glauca clone GQ03813_J06 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLB8LNN41e-150B8LNN4_PICSI; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G09460.11e-58myb domain protein 6