PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00039314-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family MYB
Protein Properties Length: 353aa    MW: 39218.6 Da    PI: 6.6569
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00039314-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.32.8e-161462148
                      TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                      +g+W++eEd +l+++++++G+g +W + ++++g++R++k+c++rw++yl
  PSME_00039314-RA 14 KGPWSAEEDSKLKEYIEKFGTGgNWLALPQKVGLKRCGKSCRLRWLNYL 62
                      79*********************************************97 PP
2Myb_DNA-binding39.51.3e-1269111246
                       SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
   Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                       g +++eEd ++  +    G++ W+ Ia++++ gRt++++k++w++
  PSME_00039314-RA  69 GGFSEEEDNIICSLYISIGSR-WSIIAAHLP-GRTDNDIKNYWNT 111
                       569******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.815962IPR017930Myb domain
SuperFamilySSF466894.21E-2711109IPR009057Homeodomain-like
SMARTSM007175.0E-141364IPR001005SANT/Myb domain
PfamPF002492.1E-151462IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.7E-231569IPR009057Homeodomain-like
CDDcd001671.61E-101662No hitNo description
PROSITE profilePS5129421.76163117IPR017930Myb domain
SMARTSM007177.1E-1267115IPR001005SANT/Myb domain
PfamPF002493.3E-1169111IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.2E-2370117IPR009057Homeodomain-like
CDDcd001678.96E-971111No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 353 aa     Download sequence    Send to blast
MGRAPCCDNA SVKKGPWSAE EDSKLKEYIE KFGTGGNWLA LPQKVGLKRC GKSCRLRWLN  60
YLRPNLKHGG FSEEEDNIIC SLYISIGSRW SIIAAHLPGR TDNDIKNYWN TKLKKKLLGK  120
RKDRQTGSLA EAKQESKDMQ SYGTSGANTS RNICASQQQL EDLDQLMNIG TNGAYSKLGS  180
GITSQLFDQN CGTRINEASS SSEPFTFQPN PQQVQLDQEL SDLDSCLGTL LQRLEGTVAD  240
HNSNNSMAMI NTSSPMEASN CTYNSSQIPR STAQNQYNLS QIPYESASAS PVLESARHAG  300
NHIKEKNPSA FNPAAGRNYE STWMNTFDAE SNNLEAYRIW TELSDLYYAI MTD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-25141177108B-MYB
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023912292.15e-83transcription factor MYB36
TrEMBLD5ABB61e-161D5ABB6_PICSI; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57620.15e-73myb domain protein 36