PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00039195-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family MYB
Protein Properties Length: 388aa    MW: 42838.5 Da    PI: 7.8628
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00039195-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.55.4e-171462148
                      TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                      rg+W++eEd  l+++++++G+g +W t ++++g++R++k+c++rw++yl
  PSME_00039195-RA 14 RGPWSPEEDSELKQYIEKYGTGgNWITLPQKVGLKRCGKSCRLRWLNYL 62
                      89*********************************************97 PP
2Myb_DNA-binding41.14.2e-1369111246
                       SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
   Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                       g +++eEd+l+  +++  G++ W+ Ia+ ++ gRt++++k++w++
  PSME_00039195-RA  69 GGFSEEEDKLICSLFNSIGSR-WSIIAAQLP-GRTDNDIKNYWNT 111
                       569******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.103962IPR017930Myb domain
SuperFamilySSF466891.29E-2711109IPR009057Homeodomain-like
SMARTSM007173.1E-131364IPR001005SANT/Myb domain
PfamPF002491.2E-151462IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.1E-241569IPR009057Homeodomain-like
CDDcd001673.11E-101662No hitNo description
PROSITE profilePS5129421.42163117IPR017930Myb domain
SMARTSM007176.6E-1267115IPR001005SANT/Myb domain
PfamPF002494.0E-1269111IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.2E-2370117IPR009057Homeodomain-like
CDDcd001675.26E-971113No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 388 aa     Download sequence    Send to blast
MGRAPCCDKA NVKRGPWSPE EDSELKQYIE KYGTGGNWIT LPQKVGLKRC GKSCRLRWLN  60
YLRPNIKHGG FSEEEDKLIC SLFNSIGSRW SIIAAQLPGR TDNDIKNYWN TRLKKKLIGK  120
DKGRQTRRLA AAKQERKDMQ SYATSDANTS PNIYGPQQQP GGVHQQPAGV HQHTNIKMNG  180
LYSSFGSGLN SQLFEQTCGA TITESSSSSG PASCQLNLQQ VQLDRQDVAD RNSCLRKLLQ  240
GLEGTVIDNH NASSQIQASD CTNASEIMHS IAYNPYNSDA ANQISYDTAA SPIPMYGGYI  300
QNHTKLGSPS AAFAQNDHSL VFPASRSIDE GNYESSASAW MNTFGAENNN LGPSAFSPEL  360
NDLLLYNNFS QVQQREACYY DCSSISIY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A5e-26141177108B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020110942.16e-82transcription factor MYB36-like
TrEMBLD5ABB61e-151D5ABB6_PICSI; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57620.13e-79myb domain protein 36