PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PSME_00039090-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
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Family | NAC | ||||||||
Protein Properties | Length: 186aa MW: 21348.8 Da PI: 10.2292 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 158.7 | 2.3e-49 | 28 | 154 | 2 | 128 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 p GfrF P+deelvv+yL+kk++++ +++ +i+evd+yk++Pw+Lp k+ +ekewy F++rd+ky++g+r++ra++sgyWkat dk++ + PSME_00039090-RA 28 PLGFRFFPKDEELVVHYLCKKAASQIIPV-PIIAEVDLYKYDPWQLPDKALFGEKEWYVFTPRDRKYPNGSRPKRAASSGYWKATCADKPINA 119 78***************************.88***************8777899*************************************** PP NAM 95 k.kgelvglkktLvfykgrapkgektdWvmheyrl 128 k +++ vg+kk Lvfy g+apkg+kt+W+mheyrl PSME_00039090-RA 120 KgGKKRVGIKKALVFYAGKAPKGSKTNWIMHEYRL 154 966777***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 3.4E-54 | 21 | 156 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 50.348 | 27 | 179 | IPR003441 | NAC domain |
Pfam | PF02365 | 8.8E-25 | 28 | 154 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 186 aa Download sequence Send to blast |
MGTSLGDFHE GQPWILKNMD CHEHNQWPLG FRFFPKDEEL VVHYLCKKAA SQIIPVPIIA 60 EVDLYKYDPW QLPDKALFGE KEWYVFTPRD RKYPNGSRPK RAASSGYWKA TCADKPINAK 120 GGKKRVGIKK ALVFYAGKAP KGSKTNWIMH EYRLADVSRP TRMKGSLRVS WSISSLLCFE 180 SAVLKR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 2e-66 | 15 | 154 | 3 | 140 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_026426066.1 | 5e-75 | NAC domain-containing protein 68-like | ||||
Swissprot | Q39013 | 6e-72 | NAC2_ARATH; NAC domain-containing protein 2 | ||||
TrEMBL | A0A0D6R3P9 | 1e-85 | A0A0D6R3P9_ARACU; Uncharacterized protein | ||||
STRING | XP_008792530.1 | 7e-74 | (Phoenix dactylifera) | ||||
STRING | GSMUA_Achr4P02390_001 | 1e-74 | (Musa acuminata) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G01720.1 | 2e-74 | NAC family protein |