PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PSME_00038959-RA

Organism

Pseudotsuga menziesii

Taxonomic ID

3357

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga

Family

LBD

Protein Properties

Length: 455aa MW: 49983.3 Da PI: 5.5176

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PSME_00038959-RA	genome	PRS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	108.5	5.1e-34	91	189	1	99
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkae 93 +CaaCk++r+kC+++C lapyf ++++kf +h++FG+ +v kllk lp e+r +a+ss+v+eA r+rdPv+G++gvi++l++++ +l+++ PSME_00038959-RA 91 SCAACKTQRKKCTEKCLLAPYFRPDEAEKFLLIHRVFGNGHVNKLLKGLPAEQRGEAVSSMVFEATERLRDPVHGCLGVINDLHKKIGELESK 183 6******************************************************************************************99 PP DUF260 94 lallke 99 l+++++ PSME_00038959-RA 184 LDSTEA 189 998775 PP
2	DUF260	112.5	2.8e-35	295	392	1	98
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkae 93 +CaaCk++r+kC+++C lapyf ++++kf vh++FG+ nv kllk lp e+r +a+ss+vyeA r+rdPv+G+++vi++l++++++l+ + PSME_00038959-RA 295 SCAACKTQRKKCTEKCLLAPYFRPDDAEKFLLVHRVFGNGNVNKLLKGLPAEQRGEAVSSMVYEATERLRDPVHGCLRVINDLHKKVAELELQ 387 6******************************************************************************************99 PP DUF260 94 lallk 98 la++ PSME_00038959-RA 388 LASTD 392 99876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	23.272	90	191	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	8.6E-34	91	187	IPR004883	Lateral organ boundaries, LOB
PROSITE profile	PS50891	23.339	294	395	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	3.5E-35	295	391	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 455 aa Download sequence Send to blast
MWALRDGNQD SSSAANTNGK VTEQPLIASS YPGRLITFAY NYDAPPRFKL STEVPALFSL 60 HSATMENAFT GDGREKMNNT ACRPEPLPAS SCAACKTQRK KCTEKCLLAP YFRPDEAEKF 120 LLIHRVFGNG HVNKLLKGLP AEQRGEAVSS MVFEATERLR DPVHGCLGVI NDLHKKIGEL 180 ESKLDSTEAA LANITVQYEK YDYRDKQRFG VLILATVYAG QSPSAFLLTP MESNQDFFPE 240 EPGNKGIGSE QATNDGILGH STRNGTLGSR SGVIEDKGNQ MNDTAYKPDP LPASSCAACK 300 TQRKKCTEKC LLAPYFRPDD AEKFLLVHRV FGNGNVNKLL KGLPAEQRGE AVSSMVYEAT 360 ERLRDPVHGC LRVINDLHKK VAELELQLAS TDAALANMSL QYGNLLTLIA GCNEGSDPNF 420 YSASYEQESE DTDTSRSPAV IDDVDPLQLW DGLWT

Sequence ? help Back to Top

Protein Sequence Length: 455 aa Download sequence Send to blast

MWALRDGNQD SSSAANTNGK VTEQPLIASS YPGRLITFAY NYDAPPRFKL STEVPALFSL  60
HSATMENAFT GDGREKMNNT ACRPEPLPAS SCAACKTQRK KCTEKCLLAP YFRPDEAEKF  120
LLIHRVFGNG HVNKLLKGLP AEQRGEAVSS MVFEATERLR DPVHGCLGVI NDLHKKIGEL  180
ESKLDSTEAA LANITVQYEK YDYRDKQRFG VLILATVYAG QSPSAFLLTP MESNQDFFPE  240
EPGNKGIGSE QATNDGILGH STRNGTLGSR SGVIEDKGNQ MNDTAYKPDP LPASSCAACK  300
TQRKKCTEKC LLAPYFRPDD AEKFLLVHRV FGNGNVNKLL KGLPAEQRGE AVSSMVYEAT  360
ERLRDPVHGC LRVINDLHKK VAELELQLAS TDAALANMSL QYGNLLTLIA GCNEGSDPNF  420
YSASYEQESE DTDTSRSPAV IDDVDPLQLW DGLWT

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	1e-27	90	388	10	111	LOB family transfactor Ramosa2.1
5ly0_B	1e-27	90	388	10	111	LOB family transfactor Ramosa2.1
Search in ModeBase

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07900.1	7e-41	LOB domain-containing protein 1