PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00038948-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family GATA
Protein Properties Length: 384aa    MW: 42413.3 Da    PI: 7.9216
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00038948-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA62.35.6e-20254287134
              GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                       C+ C+ttkTplWR+gp+g+k+LCnaCG++yrk +
  PSME_00038948-RA 254 CVDCKTTKTPLWRSGPQGPKSLCNACGIRYRKAR 287
                       ********************************87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF577163.75E-14247288No hitNo description
SMARTSM004012.5E-19248308IPR000679Zinc finger, GATA-type
PROSITE profilePS5011413.257248284IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.105.0E-17252287IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.22E-13253285No hitNo description
PROSITE patternPS003440254279IPR000679Zinc finger, GATA-type
PfamPF003201.0E-17254287IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007623Biological Processcircadian rhythm
GO:0009416Biological Processresponse to light stimulus
GO:0009740Biological Processgibberellic acid mediated signaling pathway
GO:0009910Biological Processnegative regulation of flower development
GO:0010187Biological Processnegative regulation of seed germination
GO:0010255Biological Processglucose mediated signaling pathway
GO:0010380Biological Processregulation of chlorophyll biosynthetic process
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 384 aa     Download sequence    Send to blast
MAQTGWKNPF CRENDDQHVN CLELALRPAM ETYPFGSGVL NCEGSEGYEA SSEVKMILGS  60
VHDHGCSPRS SAVSISVGNG LVDHKDNVYV ANHVELEGIR LNSESEKEAA GIDHQVHQYV  120
NIDQLKYNYG SLASEDETIG TWFPHEARKD ATLIVNRSGA HFQSSNGEIG ESSARPDLVE  180
NYLSQGGFPV AQREISWIRS PPKNRRALLN HEENIQEWPK TGTSCISSSA KDSTRETPLN  240
HGVGSSRNNA PRVCVDCKTT KTPLWRSGPQ GPKSLCNACG IRYRKARRAL SAFGNSNHIA  300
AEACNSTSFK RKQLADNREE KAEKFKAHFK KRSRLSIPSF KKFSPSPIHL ETNSSHSAFQ  360
RVFARDEEEA AVLLMALSCG LVNV
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00554DAPTransfer from AT5G49300Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF6784410.0EF678441.1 Picea sitchensis clone WS02921_M09 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLB8LRB80.0B8LRB8_PICSI; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G49300.19e-17GATA transcription factor 16