PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PSME_00038757-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
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Family | LSD | ||||||||
Protein Properties | Length: 207aa MW: 22690.6 Da PI: 8.6659 | ||||||||
Description | LSD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-LSD1 | 32.5 | 1.4e-10 | 6 | 30 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 Cg CrtlL+Y rGA+sV+C++C tV PSME_00038757-RA 6 CGCCRTLLMYSRGATSVQCSCCSTV 30 9**********************99 PP | |||||||
2 | zf-LSD1 | 35.6 | 1.6e-11 | 44 | 68 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 Cg+C t+L+Y +GAps+ CalC++V PSME_00038757-RA 44 CGNCFTTLMYSYGAPSINCALCHFV 68 ***********************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
TIGRFAMs | TIGR01053 | 5.5E-13 | 3 | 32 | IPR005735 | Zinc finger, LSD1-type |
Pfam | PF06943 | 5.5E-10 | 6 | 30 | IPR005735 | Zinc finger, LSD1-type |
TIGRFAMs | TIGR01053 | 1.1E-8 | 41 | 69 | IPR005735 | Zinc finger, LSD1-type |
Pfam | PF06943 | 5.6E-11 | 44 | 68 | IPR005735 | Zinc finger, LSD1-type |
Sequence ? help Back to Top |
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Protein Sequence Length: 207 aa Download sequence Send to blast |
MVQLICGCCR TLLMYSRGAT SVQCSCCSTV NLAIEANQVA HVNCGNCFTT LMYSYGAPSI 60 NCALCHFVTN FGQISNMRMP LPAQRPLVAA TTAPASSSAR PTQSQMQTVV VENPMTVDER 120 GKMLPSTTHE QKFFCKKTPC VTCNLPPNPH VVEWQQVTVI CSYVADVRVM VHSTSHHEHL 180 GKPIALPVAS PRKIPSPKFH SLLMRLK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative zinc finger that may be involved in programmed cell death and defense response. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT071760 | 1e-125 | BT071760.1 Picea sitchensis clone WS0452_N14 unknown mRNA. | |||
GenBank | EF084706 | 1e-125 | EF084706.1 Picea sitchensis clone WS02727_J11 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002988289.1 | 3e-50 | protein LOL1 | ||||
Swissprot | Q6ASS2 | 1e-39 | LOL3_ORYSJ; Protein LOL3 | ||||
TrEMBL | A9NTQ6 | 3e-58 | A9NTQ6_PICSI; Uncharacterized protein | ||||
STRING | EFJ10708 | 1e-49 | (Selaginella moellendorffii) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G20380.7 | 3e-35 | LSD family protein |
Publications ? help Back to Top | |||
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