PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00038749-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family B3
Protein Properties Length: 664aa    MW: 74421.3 Da    PI: 4.7962
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00038749-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B363.43.5e-20448545195
                       EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEE.TTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
                B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltled.esgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 
                       f+k+l +sdv+++gr+vlpkk ae++   + ++e+++l +ed  s+  W++k+++  ++ks++yvl+ ++ +Fvk  +Lk gDf++F++d+ +
  PSME_00038749-RA 448 FQKELRNSDVGALGRIVLPKKEAETNlpTLTEREGMQLCMEDvHSSDNWTFKYRFwpNNKSRMYVLE-NTGDFVKKYDLKFGDFIMFYRDE-E 538
                       99**************************99999*********6666*******9989999999**99.********************665.6 PP

                       EE..EEE CS
                B3  89 efelvvk 95 
                       ++++ v+
  PSME_00038749-RA 539 NEKYIVR 545
                       6666666 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.103.8E-28443551IPR015300DNA-binding pseudobarrel domain
CDDcd100172.27E-24446548No hitNo description
SuperFamilySSF1019362.62E-21446544IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086310.391448550IPR003340B3 DNA binding domain
SMARTSM010191.1E-22448550IPR003340B3 DNA binding domain
PfamPF023625.5E-16448546IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008284Biological Processpositive regulation of cell proliferation
GO:0009733Biological Processresponse to auxin
GO:0010116Biological Processpositive regulation of abscisic acid biosynthetic process
GO:0010262Biological Processsomatic embryogenesis
GO:0010373Biological Processnegative regulation of gibberellin biosynthetic process
GO:0048573Biological Processphotoperiodism, flowering
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 664 aa     Download sequence    Send to blast
MAQGEKGQTG FQAGSQQHYH SPQDPPEWNS SSNFYTVSWT SCQQMNESDK DKTSYDEAAA  60
LSEILQEWNA DEAIDFTGME RGTCADYPQL WDRSSLLVSP INHCTSSVES SEGVGTLGIT  120
FMPSFQSNIA SRDNQQAGFE GSYTNLQGKR RMTFPYIPDP GFGFLPTRGS SISSASHLNT  180
SIPMGHHTNN AMDKNNISTA SSKNNSIVPT ATDSLWESIG EIEKSMYFHS TFDCCIGCAS  240
AAGAAQNRIP HQPEKSMFPP LYMCKPQQQH SQIACTSMEN GYNFNWNGNY FNAYDTLSRS  300
SSESVMWFVP NPLTPTRDIL PSVQVKVEEK QNVVLNNDTI NQSTPLVFDC SANVRAIRKR  360
RNMCRKRRWN FDGHTSFETL TQGFQSETPL ATWDSFSLTV GTSNVASATG RAKLHKPQGL  420
HERGAAAPPD DPDSNGKDYR TTNLKFLFQK ELRNSDVGAL GRIVLPKKEA ETNLPTLTER  480
EGMQLCMEDV HSSDNWTFKY RFWPNNKSRM YVLENTGDFV KKYDLKFGDF IMFYRDEENE  540
KYIVRAKKAE IERMITSGNS ADQTMITSRN PVDQTGPYSS PTLLEERINQ QSASDKENEV  600
SCESPHASGN SVSIDDREIA LVTVEDIFSK EFNIEFPPDI ADSVQLESIP SFGSDEISLE  660
DFMN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j9b_A2e-384445551112B3 domain-containing transcription factor FUS3
6j9b_D2e-384445551112B3 domain-containing transcription factor FUS3
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00382DAPTransfer from AT3G26790Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G26790.12e-39B3 family protein