PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PSME_00038706-RA

Organism

Pseudotsuga menziesii

Taxonomic ID

3357

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga

Family

NAC

Protein Properties

Length: 290aa MW: 33137.8 Da PI: 7.0868

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PSME_00038706-RA	genome	PRS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	176.3	8.8e-55	44	171	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 lppGfrFhPtdeelv++yLk+kv+g k+el ++i+evd+yk+ePwdLp k + +++ e+yfFs rdkky++g+r+nrat++gyWkatgkd++ PSME_00038706-RA 44 LPPGFRFHPTDEELVSYYLKRKVHGWKIEL-DIIPEVDLYKCEPWDLPvKsFLPGSDLEYYFFSARDKKYPNGSRTNRATEAGYWKATGKDRK 135 79**************************.99***********5433444667******************************* PP NAM 92 vlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 v s + + +g+kktLvfy+grap+g++t Wvmheyrl PSME_00038706-RA 136 VSS-HMRPIGMKKTLVFYRGRAPHGSRTAWVMHEYRL 171 9.999****************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.31E-62	38	194	IPR003441	NAC domain
PROSITE profile	PS51005	58.792	44	194	IPR003441	NAC domain
Pfam	PF02365	8.2E-29	45	171	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 290 aa Download sequence Send to blast
DVNADLIEES IASTLWPFLI CVVFLEREAV NTGSDLAVMA PISLPPGFRF HPTDEELVSY 60 YLKRKVHGWK IELDIIPEVD LYKCEPWDLP VKSFLPGSDL EYYFFSARDK KYPNGSRTNR 120 ATEAGYWKAT GKDRKVSSHM RPIGMKKTLV FYRGRAPHGS RTAWVMHEYR LDEKECEALA 180 SLQDAAVLCR VFKKSGPAPK VGVQYGALVG NDFSCGLDNS WNKNKLLSVE ELSEEEDDKK 240 YSRETYSEII NDTKVDDGVS KRNVVVLKLF WAVTGYKCFE MHILNTRQSR

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	5e-55	39	200	12	171	NO APICAL MERISTEM PROTEIN
1ut4_B	5e-55	39	200	12	171	NO APICAL MERISTEM PROTEIN
1ut7_A	5e-55	39	200	12	171	NO APICAL MERISTEM PROTEIN
1ut7_B	5e-55	39	200	12	171	NO APICAL MERISTEM PROTEIN
3swm_A	6e-55	39	200	15	174	NAC domain-containing protein 19
3swm_B	6e-55	39	200	15	174	NAC domain-containing protein 19
3swm_C	6e-55	39	200	15	174	NAC domain-containing protein 19
3swm_D	6e-55	39	200	15	174	NAC domain-containing protein 19
3swp_A	6e-55	39	200	15	174	NAC domain-containing protein 19
3swp_B	6e-55	39	200	15	174	NAC domain-containing protein 19
3swp_C	6e-55	39	200	15	174	NAC domain-containing protein 19
3swp_D	6e-55	39	200	15	174	NAC domain-containing protein 19
4dul_A	5e-55	39	200	12	171	NAC domain-containing protein 19
4dul_B	5e-55	39	200	12	171	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor directing sieve element enucleation and cytosol degradation. Not required for formation of lytic vacuoles. Regulates, with NAC045, the transcription of NEN1, NEN2, NEN3, NEN4, RTM1, RTM2, UBP16, PLDZETA, ABCB10 and At1g26450. {ECO:0000269\|PubMed:25081480}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT110128	4e-70	BT110128.1 Picea glauca clone GQ03216_M01 mRNA sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020529946.1	1e-100	uncharacterized protein LOC18445393
Swissprot	Q9FFI5	1e-84	NAC86_ARATH; NAC domain-containing protein 86
TrEMBL	U5CUT8	4e-99	U5CUT8_AMBTC; Uncharacterized protein
STRING	ERN17061	1e-100	(Amborella trichopoda)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G65910.1	1e-91	NAC domain containing protein 28

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]