PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PSME_00038667-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
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Family | MYB | ||||||||
Protein Properties | Length: 374aa MW: 40315.5 Da PI: 8.0346 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 55.6 | 1.2e-17 | 18 | 63 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +g+W++eEd l + v+++G+++W++I++ ++ gR++k+c++rw + PSME_00038667-RA 18 KGPWSPEEDAALQHFVQKYGPRNWSLISKAIP-GRSGKSCRLRWCNQ 63 79******************************.***********985 PP | |||||||
2 | Myb_DNA-binding | 58.3 | 1.7e-18 | 72 | 114 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 ++T+eEd +v+a++q+G++ W+tIar++ gRt++ +k++w++ PSME_00038667-RA 72 PFTPEEDATIVRAHAQHGNK-WATIARMLS-GRTDNAIKNHWNST 114 89******************.*********.***********986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 26.871 | 13 | 68 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.41E-32 | 15 | 111 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.3E-16 | 17 | 66 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.9E-17 | 18 | 63 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.8E-25 | 19 | 71 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.80E-15 | 20 | 62 | No hit | No description |
SMART | SM00717 | 2.2E-15 | 69 | 117 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 21.114 | 70 | 119 | IPR017930 | Myb domain |
CDD | cd00167 | 1.70E-12 | 72 | 115 | No hit | No description |
Pfam | PF00249 | 2.7E-15 | 72 | 114 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.5E-23 | 72 | 118 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009723 | Biological Process | response to ethylene | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0009751 | Biological Process | response to salicylic acid | ||||
GO:0009753 | Biological Process | response to jasmonic acid | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0046686 | Biological Process | response to cadmium ion | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 374 aa Download sequence Send to blast |
MASMKGKSLG HDEPDRIKGP WSPEEDAALQ HFVQKYGPRN WSLISKAIPG RSGKSCRLRW 60 CNQLSPQVEH RPFTPEEDAT IVRAHAQHGN KWATIARMLS GRTDNAIKNH WNSTLRRRCQ 120 GGGALVIDDE ITSGADGFRK RNLCDDADAD ADADASRKFK KLTLGTTTTT EPCSSSASDR 180 SDSSLVFGSP HIYRPVPRAA PLALSNEANL TLNHHEASCS STDPPTSLCL SLPGTDTPAR 240 PTVALNALPL PLPLPVTSSP VAPLSSPVAP LSSPVAPPGY IKTEEAIEWM NSAINNTLSQ 300 MFSPILAPAW SHGIMPETLG SSGLLAVMQE MVAKEVRDYM SSMQHRNNNN AEFRGCVGKP 360 PPMGMRVSNS NALG |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gv2_A | 3e-39 | 17 | 118 | 3 | 104 | MYB PROTO-ONCOGENE PROTEIN |
1h88_C | 1e-38 | 14 | 119 | 54 | 159 | MYB PROTO-ONCOGENE PROTEIN |
1h89_C | 1e-38 | 14 | 119 | 54 | 159 | MYB PROTO-ONCOGENE PROTEIN |
1mse_C | 3e-39 | 17 | 118 | 3 | 104 | C-Myb DNA-Binding Domain |
1msf_C | 3e-39 | 17 | 118 | 3 | 104 | C-Myb DNA-Binding Domain |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00476 | DAP | Transfer from AT4G37260 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT101188 | 1e-180 | BT101188.1 Picea glauca clone GQ0071_N15 mRNA sequence. | |||
GenBank | EF601069 | 1e-180 | EF601069.1 Picea glauca R2R3-MYB transcription factor MYB6 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A5JYF0 | 0.0 | A5JYF0_PICGL; R2R3-MYB transcription factor MYB6 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G50060.1 | 3e-65 | myb domain protein 77 |