PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00038667-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family MYB
Protein Properties Length: 374aa    MW: 40315.5 Da    PI: 8.0346
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00038667-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.61.2e-171863147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
   Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                      +g+W++eEd  l + v+++G+++W++I++ ++ gR++k+c++rw + 
  PSME_00038667-RA 18 KGPWSPEEDAALQHFVQKYGPRNWSLISKAIP-GRSGKSCRLRWCNQ 63
                      79******************************.***********985 PP

2Myb_DNA-binding58.31.7e-1872114347
                       SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
   Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                       ++T+eEd  +v+a++q+G++ W+tIar++  gRt++ +k++w++ 
  PSME_00038667-RA  72 PFTPEEDATIVRAHAQHGNK-WATIARMLS-GRTDNAIKNHWNST 114
                       89******************.*********.***********986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129426.8711368IPR017930Myb domain
SuperFamilySSF466892.41E-3215111IPR009057Homeodomain-like
SMARTSM007172.3E-161766IPR001005SANT/Myb domain
PfamPF002491.9E-171863IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.8E-251971IPR009057Homeodomain-like
CDDcd001672.80E-152062No hitNo description
SMARTSM007172.2E-1569117IPR001005SANT/Myb domain
PROSITE profilePS5129421.11470119IPR017930Myb domain
CDDcd001671.70E-1272115No hitNo description
PfamPF002492.7E-1572114IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.5E-2372118IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009723Biological Processresponse to ethylene
GO:0009737Biological Processresponse to abscisic acid
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0010200Biological Processresponse to chitin
GO:0046686Biological Processresponse to cadmium ion
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 374 aa     Download sequence    Send to blast
MASMKGKSLG HDEPDRIKGP WSPEEDAALQ HFVQKYGPRN WSLISKAIPG RSGKSCRLRW  60
CNQLSPQVEH RPFTPEEDAT IVRAHAQHGN KWATIARMLS GRTDNAIKNH WNSTLRRRCQ  120
GGGALVIDDE ITSGADGFRK RNLCDDADAD ADADASRKFK KLTLGTTTTT EPCSSSASDR  180
SDSSLVFGSP HIYRPVPRAA PLALSNEANL TLNHHEASCS STDPPTSLCL SLPGTDTPAR  240
PTVALNALPL PLPLPVTSSP VAPLSSPVAP LSSPVAPPGY IKTEEAIEWM NSAINNTLSQ  300
MFSPILAPAW SHGIMPETLG SSGLLAVMQE MVAKEVRDYM SSMQHRNNNN AEFRGCVGKP  360
PPMGMRVSNS NALG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A3e-39171183104MYB PROTO-ONCOGENE PROTEIN
1h88_C1e-381411954159MYB PROTO-ONCOGENE PROTEIN
1h89_C1e-381411954159MYB PROTO-ONCOGENE PROTEIN
1mse_C3e-39171183104C-Myb DNA-Binding Domain
1msf_C3e-39171183104C-Myb DNA-Binding Domain
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00476DAPTransfer from AT4G37260Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1011881e-180BT101188.1 Picea glauca clone GQ0071_N15 mRNA sequence.
GenBankEF6010691e-180EF601069.1 Picea glauca R2R3-MYB transcription factor MYB6 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA5JYF00.0A5JYF0_PICGL; R2R3-MYB transcription factor MYB6
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50060.13e-65myb domain protein 77